Parental gene:

TUBB1, ENSPPYG00000011180

Aliases:None
Description:tubulin, beta 1 class VI [Source:HGNC Symbol;Acc:16257]
Organism:Orangutan (Pongo abelii)
Coordinates:20:57119257..57124711(+)


>ENSPPYG00000011180
ATGCGTGAAATTGTCCATATTCAGATTGGCCAGTGTGGCAACCAGATCGGAGCCAAGTTCTGGGAGATGATTGGTGAGGA
ACATGGGATTGACTTGGCTGGGAGCGACTGCGGGGCCTCGGCCTTGCAGCTGGAGAGAATCAGCGTGTACTACAACGAAG
CCTATGGTAGGAAATATGTGCCCCGAGCAGTCTTGGTGGACCTAGAACCTGGGACGATGGACAGCATTCGATCTAGCAAA
TTAGGAGCCCTCTTTCAACCCGACAGTTTTGTCCATGGTAACTCTGGGGCTGGCAATAACTGGGCCAAAGGCCACTACAC
GGAGGGAGCTGAGCTGATCGAGAACGTCCTAGAGGTGGTGAGGCACGAGAGTGAGAGCTGCGACTGCCTGCAGGGCTTCC
AGATCGTCCACTCCCTGGGCGGGGGCACAGGCTCCGGGATGGGCACTCTGCTCATGAACAAGATTAGAGAGGAGTACCCG
GACCGGATCATGAATTCCTTCAGTGTCATGCCTTCTCCCAAGGTGTCGGACACGGTGGTGGAGCCCTACAATGCGGTTCT
GTCCATCCACCAGCTGATTGAGAATGCAGATGCCTGTTTCTGCATTGACAATGAGGCCCTCTATGACATCTGCTTCCGTA
CCCTGAAGCTGACGACACCCACCTACGGGGATCTCAACCACCTAGTGTCCTTGACCATGAGTGGCATAACCACCTCCCTC
CGGTTCCCGGGTCAGCTCAACGCAGACCTGCGCAAGCTGGCGGTGAACATGGTCCCCTTCCCCCGCCTGCACTTCTTTAT
GCCCGGCTTTGCCCCACTCACGGCCCAGGGCAGCCAGCAGTACCGAGCCCTCTCCGTGGCCGAGCTCACCCAGCAGATGT
TTGATGCCCGCAATACCATGGCTGCCTGTGACCCCCGCCGTGGCCGCTACCTCACAGTGGCCTGCATTTTCCGGGGCAAG
ATGTCCACCAAGGAAGTGGACCAGCAACTGCTCTCCGTGCAGACCAGGAACAGCAGCTGCTTTGTGGAGTGGATTCCCAA
TAATGTCAAGGTGGCTGTCTGCGACATCCCGCCCCGGGGGCTGAGCATGGCCGCCACCTTCATTGGCAACAACACGGCCA
TCCAAGAGATCTTTAATAGGGTCTCTGAGCATTTCTCAGCCATGTTCAAAAGGAAAGCTTTTGTGCACTGGTACACCAGC
GAAGGGATGGACATAAACGAATTTGGGGAAGCTGAAAGTAACATCCATGATTTGGTATCCGAGTACCAACAATTTCAAGA
TGCCAAAGCAGTTCTAGAGGAAGATGAAGAGGGCATGGAGGAGGCAGAAATGGAGCCAGAAGATAAGGGACATTCA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .17 RPM
SRP007412_cerebellum 0 .73 RPM
SRP007412_heart 0 .36 RPM
SRP007412_kidney 0 .53 RPM
SRP007412_liver 0 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010101 possible_ortholog 1 retrogene
retro_cjac_800,
Callithrix jacchus ENSCJAG00000011697 possible_ortholog 1 retrogene
retro_cjac_3284,
Dipodomys ordii ENSDORG00000015889 possible_ortholog 1 retrogene
retro_dord_254,
Homo sapiens ENSG00000173213 possible_ortholog 1 retrogene
retro_hsap_3733,
Homo sapiens ENSG00000173876 possible_ortholog 1 retrogene
retro_hsap_3944,
Mus musculus ENSMUSG00000016255 ortholog_one2one 1 retrogene
retro_mmus_1109,
Pongo abelii ENSPPYG00000016419 other_paralog 4 retrogenes
retro_pabe_2920, retro_pabe_3210, retro_pabe_3698, retro_pabe_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3250 75.28 97.79
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Download FASTA sequences of all ENSPPYG00000011180 retrocopies