Parental gene: | MTHFD2, ENSPPYG00000012283 |
| Aliases: | None |
| Description: | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:7434] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 2a:36488757..36507804(-) |
>ENSPPYG00000012283
ATGGCTGCGACTTCTCTAATGTCCGCTTTGGCTGCTCGGCTGCTGCAGCCCGCGCACAGCTGCTCCCTTCGCCTTCGCCC
TTTCCACCTCGCGGCAGTTCGAAATGAAGCTGTTGTCATTTCTGGAAGGAAACTGGCCCAGCAGATCAAGCAGGAAGTGC
GGCAGGAGGTAGAAGAGTGGGTGGCCTCAGGCAACAAACAGCCACACCTGAGCGTGATCCTGGTTGGCGAGAATCCTGCA
AGTCACTCCTACGTTCTCAACAAAACCAGGGCAGCTGCAGATGTGGGAATCAACAGTGAGACAATTGTGAAACCAGCTTC
AATTTCAGAGGAAGAATTGTTGAATTTAATCAATAAACTGAATAATGATGATAATGTAGATGGCCTCCTTGTTCAGCTGC
CTCTTCCAGAGCATATTGATGAGAGAAGGATCTGCAATGCTGTTTCTCCAGACAAGGATGTTGATGGCTTTCATGTAATT
AATGTAGGACGAATGTGTTTGGATCAGTATTCCATGTTACCGGCTACCCCATGGGGTGTGTGGGAAATAATCAAGCGAAC
TGGCATTCCAACCCTAGGGAAGAATGTGGTTGTGGCTGGAAGGTCAAAAAATGTTGGAATGCCCATTGCAATGTTACTAC
ACACAGATGGGGCGCATGAACGTCCCGGAGGTGATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAGCAGTTG
AAGAAACATACGATTCTTGCAGATATTGTAATATCTGCTGCAGGTATTCCAAATCTGATCACAGCAGATATGATCAAGGC
AGGAGCAGCAGTCATTGATGTGGGAATAAATAGAGTTCACGATCCTATAACTGCCAAATCCAAGTTGGTTGGAGATGTGG
ATTTTGAAGGAGTCAGACAAAAAGCCGGGTATATCACTCCAGTTCCTGGAGGTGTTGGCCCCATGACAGTGGCAATGCTA
ATGAAGAATACCATTATTGCTGCAAAAAAGGTGCTGAGGCTTGAAGAGCGAGAAGTGCTGAAGTCTAAAGAGCTTGGGGT
AGCCACTAATTAA
ATGGCTGCGACTTCTCTAATGTCCGCTTTGGCTGCTCGGCTGCTGCAGCCCGCGCACAGCTGCTCCCTTCGCCTTCGCCC
TTTCCACCTCGCGGCAGTTCGAAATGAAGCTGTTGTCATTTCTGGAAGGAAACTGGCCCAGCAGATCAAGCAGGAAGTGC
GGCAGGAGGTAGAAGAGTGGGTGGCCTCAGGCAACAAACAGCCACACCTGAGCGTGATCCTGGTTGGCGAGAATCCTGCA
AGTCACTCCTACGTTCTCAACAAAACCAGGGCAGCTGCAGATGTGGGAATCAACAGTGAGACAATTGTGAAACCAGCTTC
AATTTCAGAGGAAGAATTGTTGAATTTAATCAATAAACTGAATAATGATGATAATGTAGATGGCCTCCTTGTTCAGCTGC
CTCTTCCAGAGCATATTGATGAGAGAAGGATCTGCAATGCTGTTTCTCCAGACAAGGATGTTGATGGCTTTCATGTAATT
AATGTAGGACGAATGTGTTTGGATCAGTATTCCATGTTACCGGCTACCCCATGGGGTGTGTGGGAAATAATCAAGCGAAC
TGGCATTCCAACCCTAGGGAAGAATGTGGTTGTGGCTGGAAGGTCAAAAAATGTTGGAATGCCCATTGCAATGTTACTAC
ACACAGATGGGGCGCATGAACGTCCCGGAGGTGATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAGCAGTTG
AAGAAACATACGATTCTTGCAGATATTGTAATATCTGCTGCAGGTATTCCAAATCTGATCACAGCAGATATGATCAAGGC
AGGAGCAGCAGTCATTGATGTGGGAATAAATAGAGTTCACGATCCTATAACTGCCAAATCCAAGTTGGTTGGAGATGTGG
ATTTTGAAGGAGTCAGACAAAAAGCCGGGTATATCACTCCAGTTCCTGGAGGTGTTGGCCCCATGACAGTGGCAATGCTA
ATGAAGAATACCATTATTGCTGCAAAAAAGGTGCTGAGGCTTGAAGAGCGAGAAGTGCTGAAGTCTAAAGAGCTTGGGGT
AGCCACTAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 2 .88 RPM |
| SRP007412_cerebellum | 7 .17 RPM |
| SRP007412_heart | 36 .27 RPM |
| SRP007412_kidney | 4 .18 RPM |
| SRP007412_liver | 3 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017345 | ortholog_many2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000008716 | ortholog_many2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017810 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000013987 | ortholog_one2many | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000007829 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009089 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000013948 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000010833 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2271 | 93.23 | 92.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2729 | 81.94 | 88.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3077 | 81.32 | 98.29 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000012283 retrocopies