Parental gene:

MTHFD2, ENSPPYG00000012283

Aliases:None
Description:methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:7434]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:36488757..36507804(-)


>ENSPPYG00000012283
ATGGCTGCGACTTCTCTAATGTCCGCTTTGGCTGCTCGGCTGCTGCAGCCCGCGCACAGCTGCTCCCTTCGCCTTCGCCC
TTTCCACCTCGCGGCAGTTCGAAATGAAGCTGTTGTCATTTCTGGAAGGAAACTGGCCCAGCAGATCAAGCAGGAAGTGC
GGCAGGAGGTAGAAGAGTGGGTGGCCTCAGGCAACAAACAGCCACACCTGAGCGTGATCCTGGTTGGCGAGAATCCTGCA
AGTCACTCCTACGTTCTCAACAAAACCAGGGCAGCTGCAGATGTGGGAATCAACAGTGAGACAATTGTGAAACCAGCTTC
AATTTCAGAGGAAGAATTGTTGAATTTAATCAATAAACTGAATAATGATGATAATGTAGATGGCCTCCTTGTTCAGCTGC
CTCTTCCAGAGCATATTGATGAGAGAAGGATCTGCAATGCTGTTTCTCCAGACAAGGATGTTGATGGCTTTCATGTAATT
AATGTAGGACGAATGTGTTTGGATCAGTATTCCATGTTACCGGCTACCCCATGGGGTGTGTGGGAAATAATCAAGCGAAC
TGGCATTCCAACCCTAGGGAAGAATGTGGTTGTGGCTGGAAGGTCAAAAAATGTTGGAATGCCCATTGCAATGTTACTAC
ACACAGATGGGGCGCATGAACGTCCCGGAGGTGATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAGCAGTTG
AAGAAACATACGATTCTTGCAGATATTGTAATATCTGCTGCAGGTATTCCAAATCTGATCACAGCAGATATGATCAAGGC
AGGAGCAGCAGTCATTGATGTGGGAATAAATAGAGTTCACGATCCTATAACTGCCAAATCCAAGTTGGTTGGAGATGTGG
ATTTTGAAGGAGTCAGACAAAAAGCCGGGTATATCACTCCAGTTCCTGGAGGTGTTGGCCCCATGACAGTGGCAATGCTA
ATGAAGAATACCATTATTGCTGCAAAAAAGGTGCTGAGGCTTGAAGAGCGAGAAGTGCTGAAGTCTAAAGAGCTTGGGGT
AGCCACTAATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 2 .88 RPM
SRP007412_cerebellum 7 .17 RPM
SRP007412_heart 36 .27 RPM
SRP007412_kidney 4 .18 RPM
SRP007412_liver 3 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017345 ortholog_many2many 2 retrogenes
retro_amel_1098, retro_amel_1584,
Canis familiaris ENSCAFG00000008716 ortholog_many2many 1 retrogene
retro_cfam_580,
Callithrix jacchus ENSCJAG00000017810 ortholog_one2one 3 retrogenes
retro_cjac_2225, retro_cjac_2568, retro_cjac_3078,
Macropus eugenii ENSMEUG00000013987 ortholog_one2many 4 retrogenes
retro_meug_1468, retro_meug_152, retro_meug_1577, retro_meug_2074,
Mustela putorius furo ENSMPUG00000007829 ortholog_one2many 3 retrogenes
retro_mputfur_1087, retro_mputfur_1397, retro_mputfur_1551,
Otolemur garnettii ENSOGAG00000009089 ortholog_one2many 1 retrogene
retro_ogar_3390,
Pteropus vampyrus ENSPVAG00000013948 ortholog_one2many 2 retrogenes
retro_pvam_1357, retro_pvam_1414,
Rattus norvegicus ENSRNOG00000010833 possible_ortholog 1 retrogene
retro_rnor_2170,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2271 93.23 92.86
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2. retro_pabe_2729 81.94 88.00
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3. retro_pabe_3077 81.32 98.29
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Download FASTA sequences of all ENSPPYG00000012283 retrocopies