Parental gene:

CCT7, ENSPPYG00000012297

Aliases:None
Description:T-complex protein 1 subunit eta [Source:RefSeq peptide;Acc:NP_001126797]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:37548155..37573168(-)


>ENSPPYG00000012297
ATGATGCCCACACCAGTTATCCTATTGAAAGAGGGGACTGATAGCTCCCAAGGCATCCCCCAGCTTGTGAGTAACATCAG
TGCCTGCCAGGTGATTGCTGAGGTAAGAACTACCCTGGGTCCCCGTGGCATGGACAAGCTTATTGTAGATGGCAGAGGCA
AAGCAACAATTTCTAATGATGGGGCCACAATTCTGAAACTTCTTGATGTTGTCCATCCTGCAGCAAAGACTTTGGTAGAC
ATTGCCAAATCTCAAGATGCTGAGGTGGGTGATGGCACCACCTCAGTGACCTTGCTGGCTGCAGAGTTTCTGAAGCAGGT
GAAACCCTATGTGGAGGAAGGTTTACACCCCCAGATCATCATTCGAGCTTTCCGCACAGCCACCCAGCTGGCAGTTAACA
AGATCAAAGAGATTGCTGTGACCGTGAAGAAGGCAGATAAAGTGGAGCAGAGGAAGCTGCTGGAAAAGTGTGCCATGACC
GCTCTGAGCTCCAAGCTGATCTCCCAGCAGAAAGCTTTCTTTGCTAAGATGGTGGTGGATGCTGTGATGATGCTCGATGA
TTTGCTGCAGCTTAAAATGATTGGAATCAAGAAGGTACAGGGTGGAGCCCTCGAGGATTCTCAGCTGGTAGCTGGTGTTG
CATTCAAGAAGACTTTCTCTTATGCTGGGTTTGAAATGCAACCCAAAAAGTACCACAATCCCAAGATTGCCCTTTTGAAT
GTCGAGCTCGAGTTGAAAGCTGAGAAAGACAATGCTGAGATAAGAGTCCACACAGTTGAGGATTATCAGGCAATTGTTGA
TGCTGAGTGGAACATTCTCTATGACAAGTTAGAGAAGATCCATCATTCTGGAGCCAAAGTTGTCTTGTCCAAACTCCCCA
TTGGGGATGTGGCCACCCAGTACTTTGCTGACAGGGACATGTTCTGTGCTGGCCGAGTACCTGAGGAGGATCTGAAGAGG
ACAATGATGGCCTGTGGAGGCTCAATCCAGACCAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCCAGGTGTT
TGAAGAGACCCAGATTGGAGGCGAGAGGTACAATTTTTTTACTGGCTGCCCCAAGGCCAAGACATGCACCTTCATCCTCC
GTGGCGGTGCCGAGCAGTTTATGGAGGAGACAGAGCGGTCCCTGCATGATGCCATCATGATCGTCAGGAGGGCCATCAAG
AATGATTCAGTGGTGGCTGGTGGCGGGGCCATTGAGATGGAGCTCTCCAAGTACCTGCGGGATTACTCAAGGACTATTCC
AGGAAAACAGCAGCTGTTGATTGGGGCATATGCCAAGGCCTTGGAGATTATCCCACGCCAGCTGTGTGACAATGCTGGCT
TTGATGCCACAAACATTCTCAACAAGCTGCGGGCTCGGCATGCCCAGGGGGGTACATGGTATGGAGTGGACATCAACAAC
GAGGACATTGCTGACAACTTTGAAGCCTTCGTGTGGGAGCCAGCTATGGTGCGGATCAATGCGCTGACAGCAGCCTCTGA
AGCTGCGTGCCTGATTGTGTCTGTAGATGAAACCATCAAGAACCCCCGCTCAACTGTGGATGCTCCCGCAGCAGCAGGCC
GGGGCCGTGGTCGTGGCCGCCCCCACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 111 .96 RPM
SRP007412_cerebellum 145 .68 RPM
SRP007412_heart 55 .09 RPM
SRP007412_kidney 71 .07 RPM
SRP007412_liver 53 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000008879 ortholog_one2many 1 retrogene
retro_cfam_151,
Cavia porcellus ENSCPOG00000019869 ortholog_one2one 1 retrogene
retro_cpor_1458,
Homo sapiens ENSG00000135624 ortholog_one2one 1 retrogene
retro_hsap_3354,
Gorilla gorilla ENSGGOG00000007766 ortholog_one2one 1 retrogene
retro_ggor_2274,
Macropus eugenii ENSMEUG00000000416 ortholog_one2one 1 retrogene
retro_meug_1995,
Macaca mulatta ENSMMUG00000012448 ortholog_one2one 1 retrogene
retro_mmul_2093,
Nomascus leucogenys ENSNLEG00000010414 ortholog_one2one 1 retrogene
retro_nleu_1175,
Otolemur garnettii ENSOGAG00000009162 ortholog_one2one 2 retrogenes
retro_ogar_2001, retro_ogar_2698,
Pan troglodytes ENSPTRG00000012060 ortholog_one2one 1 retrogene
retro_ptro_2133,
Rattus norvegicus ENSRNOG00000015630 ortholog_one2one 2 retrogenes
retro_rnor_2179, retro_rnor_535,
Tupaia belangeri ENSTBEG00000002066 ortholog_one2one 2 retrogenes
retro_tbel_3708, retro_tbel_3751,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2760 75.68 67.90
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Download FASTA sequences of all ENSPPYG00000012297 retrocopies