RetrogeneDB ID: | retro_meug_1995 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold7761:16869..17728(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCT7 | ||
Ensembl ID: | ENSMEUG00000000416 | ||
Aliases: | None | ||
Description: | chaperonin containing TCP1, subunit 7 (eta) [Source:HGNC Symbol;Acc:1622] |
Percent Identity: | 78.2 % |
Parental protein coverage: | 53.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RVHNVADYQAIVDAEWNILYDKLEKISNSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLRRTMMA |
R..NVADYQAI.D.EWN.L.DKLEK.SNSGAKV.LSK....DVATQYF.D.D.FCAGR.PE..LRRTMMA | |
Retrocopy | RLRNVADYQAIEDVEWNTLNDKLEKNSNSGAKVILSKVLTRDVATQYFTDWDIFCAGRFPEKHLRRTMMA |
Parental | CGGSIQTSVNSLTPDVLGSCQLFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMI |
CGGSIQTSV.SLT.DVLGSC.LFEE.QIG.ERYNFFTG.PKAKTCTIIL.G..EQFMEETERSL..AIMI | |
Retrocopy | CGGSIQTSVSSLTHDVLGSCRLFEEIQIGSERYNFFTGYPKAKTCTIILLGDTEQFMEETERSLPNAIMI |
Parental | VRRAIKXXXXXXXGGAIEMELSKYLRDYSRTIPG-KQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKL |
VRRAIK.......G.A.EME.SKYL.DYSRTIP..KQQLLI.AYAKALEIIP.QLC.N.GF.ATNILNKL | |
Retrocopy | VRRAIKNDSVIAGGEATEMEFSKYLWDYSRTIPA<KQQLLIRAYAKALEIIPQQLCNNTGFNATNILNKL |
Parental | RAKHAQGGMWYGVDINNEDIADNFEAFV-WEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDGPPVG |
.AKHAQGGMWYG.DINNED.ADNFEAFV...PAMVRINALTAASEAACLIVS.DET.KNP..TVDGPP.. | |
Retrocopy | WAKHAQGGMWYGMDINNEDFADNFEAFV<VKPAMVRINALTAASEAACLIVSMDETVKNPCFTVDGPPRR |
Parental | RGRGRGRPH |
.G..RG.PH | |
Retrocopy | PGQRRGHPH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008879 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007937 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000019869 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009409 | 2 retrocopies | |
Homo sapiens | ENSG00000135624 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007766 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000416 | 1 retrocopy |
retro_meug_1995 ,
|
Macaca mulatta | ENSMMUG00000012448 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010414 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009162 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012297 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012060 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015630 | 2 retrocopies | |
Sorex araneus | ENSSARG00000011475 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002066 | 2 retrocopies |