Parental gene:

HMGCS1, ENSPPYG00000015439

Aliases:None
Description:Hydroxymethylglutaryl-CoA synthase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q5R7Z9]
Organism:Orangutan (Pongo abelii)
Coordinates:5:44466802..44493398(-)


>ENSPPYG00000015439
ATGCCTGGATCACTTCCTTTGAATGCAGAAGCTTGCTGGCCAAAAGATGTGGGAATTGTTGCCCTTGAGATCTATTTTCC
TTCTCAATATGTTGATCAAGCAGAGTTGGAAAAATATGATGGTGTAGCTGCTGGAAAGTATACCATTGGCTTGGGCCAGG
CCAAGATGGGCTTCTGCACGGATAGAGAAGATATTAACTCTCTTTGCATGACTGTGGTTCAGAATCTTATGGAGAGAAAT
AACCTTTCCTATGATTGCATTGGGCGGCTGGAAGTTGGAACAGAGACAATCATTGACAAATCAAAGTCTGTGAAGACTAA
TTTGATGCAGCTGTTTGAAGAGTCTGGGAATACAGATATAGAAGGAATTGACACAACTAATGCATGCTATGGAGGCACAG
CTGCTGTCTTCAATGCTGTTAACTGGATTGAGTCCAGCTCTTGGGATGGACGGTATGCCCTGGTAGTTGCAGGAGATATT
GCTGTATATGCCACAGGAAATGCTAGACCTACAGGTGGAGTTGGAGCAGTAGCTCTGCTAATTGGGCCAAATGCTCCTTT
AATTTTTGAACGAGGGCTTCGTGGGACACATATGCAACATGCCTATGATTTTTACAAGCCTGATATGCTATCTGAATATC
CTATAGTAGATGGAAAACTCTCCATACAGTGCTACCTCAGTGCATTAGACCGCTGCTATTCTGTCTACTGCAAAAAGATC
CGTGCCCAGTGGCAGAAAGAGGGAAATGATAAAGATTTTACCTTGAATGATTTTGGCTTCATGATCTTTCACTCACCATA
TTGTAAACTGGTTCAGAAATCTCTAGCTCGGATGTTGCTGAATGACTTCCTTAACGACCAGAATAGAGATAAAAATAGTA
TCTATAGTGGCCTGGAAGCCTTTGGGGATGTTAAATTAGAAGACACCTACTTTGATAGAGATGTGGAGAAGGCATTTATG
AAGGCTAGCTCTGAACTCTTCAGTCAGAAAACAAAGGCATCTTTACTTGTATCAAATCAAAATGGAAATATGTACACATC
TTCAGTATATGGTTCCCTTGCATCTGTTCTAGCACAGTACTCACCTCAGCAATTAGCAGGGAAGAGAATTGGAGTGTTTT
CTTATGGTTCTGGTTTGGCTGCCACTCTGTACTCTCTTAAAGTCACACAAGATGCTACACCGGGGTCTGCTCTTGATAAA
ATAACAGCAAGTTTATGTGATCTTAAATCAAGGCTTGATTCAAGAACTGGTGTGGCACCAGATGTCTTCGCTGAAAACAT
GAAGCTCAGAGAGGACACCCATCATTTGGTCAACTATATTCCCCAGGGCTCAATAGATTCACTCTTTGAAGGAACGTGGT
ACTTAGTTAGGGTGGATGAGAAGCACAGAAGAACTTACGCTCGGCGTCCCACTCCAAATGATGACACTTTGGATGAAGGA
GTAGGACTTGTGCATTCAAACATAGCAACTGAGCATATTCCAAGCCCTGCCAAGAAAGTACCAAGACTCCCTGCCACAGC
AGCAGAACCTGAAGCAGCTGTCATTAGTAATGGGGAACATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 81 .33 RPM
SRP007412_cerebellum 34 .41 RPM
SRP007412_heart 12 .94 RPM
SRP007412_kidney 30 .50 RPM
SRP007412_liver 46 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001303 ortholog_one2one 1 retrogene
retro_cjac_1754,
Echinops telfairi ENSETEG00000003583 ortholog_one2one 1 retrogene
retro_etel_526,
Homo sapiens ENSG00000112972 ortholog_one2one 1 retrogene
retro_hsap_328,
Pan troglodytes ENSPTRG00000016845 ortholog_one2one 1 retrogene
retro_ptro_265,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_361 77.30 93.46
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Download FASTA sequences of all ENSPPYG00000015439 retrocopies