Parental gene: | HMGCS1, ENSPPYG00000015439 |
| Aliases: | None |
| Description: | Hydroxymethylglutaryl-CoA synthase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q5R7Z9] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 5:44466802..44493398(-) |
>ENSPPYG00000015439
ATGCCTGGATCACTTCCTTTGAATGCAGAAGCTTGCTGGCCAAAAGATGTGGGAATTGTTGCCCTTGAGATCTATTTTCC
TTCTCAATATGTTGATCAAGCAGAGTTGGAAAAATATGATGGTGTAGCTGCTGGAAAGTATACCATTGGCTTGGGCCAGG
CCAAGATGGGCTTCTGCACGGATAGAGAAGATATTAACTCTCTTTGCATGACTGTGGTTCAGAATCTTATGGAGAGAAAT
AACCTTTCCTATGATTGCATTGGGCGGCTGGAAGTTGGAACAGAGACAATCATTGACAAATCAAAGTCTGTGAAGACTAA
TTTGATGCAGCTGTTTGAAGAGTCTGGGAATACAGATATAGAAGGAATTGACACAACTAATGCATGCTATGGAGGCACAG
CTGCTGTCTTCAATGCTGTTAACTGGATTGAGTCCAGCTCTTGGGATGGACGGTATGCCCTGGTAGTTGCAGGAGATATT
GCTGTATATGCCACAGGAAATGCTAGACCTACAGGTGGAGTTGGAGCAGTAGCTCTGCTAATTGGGCCAAATGCTCCTTT
AATTTTTGAACGAGGGCTTCGTGGGACACATATGCAACATGCCTATGATTTTTACAAGCCTGATATGCTATCTGAATATC
CTATAGTAGATGGAAAACTCTCCATACAGTGCTACCTCAGTGCATTAGACCGCTGCTATTCTGTCTACTGCAAAAAGATC
CGTGCCCAGTGGCAGAAAGAGGGAAATGATAAAGATTTTACCTTGAATGATTTTGGCTTCATGATCTTTCACTCACCATA
TTGTAAACTGGTTCAGAAATCTCTAGCTCGGATGTTGCTGAATGACTTCCTTAACGACCAGAATAGAGATAAAAATAGTA
TCTATAGTGGCCTGGAAGCCTTTGGGGATGTTAAATTAGAAGACACCTACTTTGATAGAGATGTGGAGAAGGCATTTATG
AAGGCTAGCTCTGAACTCTTCAGTCAGAAAACAAAGGCATCTTTACTTGTATCAAATCAAAATGGAAATATGTACACATC
TTCAGTATATGGTTCCCTTGCATCTGTTCTAGCACAGTACTCACCTCAGCAATTAGCAGGGAAGAGAATTGGAGTGTTTT
CTTATGGTTCTGGTTTGGCTGCCACTCTGTACTCTCTTAAAGTCACACAAGATGCTACACCGGGGTCTGCTCTTGATAAA
ATAACAGCAAGTTTATGTGATCTTAAATCAAGGCTTGATTCAAGAACTGGTGTGGCACCAGATGTCTTCGCTGAAAACAT
GAAGCTCAGAGAGGACACCCATCATTTGGTCAACTATATTCCCCAGGGCTCAATAGATTCACTCTTTGAAGGAACGTGGT
ACTTAGTTAGGGTGGATGAGAAGCACAGAAGAACTTACGCTCGGCGTCCCACTCCAAATGATGACACTTTGGATGAAGGA
GTAGGACTTGTGCATTCAAACATAGCAACTGAGCATATTCCAAGCCCTGCCAAGAAAGTACCAAGACTCCCTGCCACAGC
AGCAGAACCTGAAGCAGCTGTCATTAGTAATGGGGAACATTAA
ATGCCTGGATCACTTCCTTTGAATGCAGAAGCTTGCTGGCCAAAAGATGTGGGAATTGTTGCCCTTGAGATCTATTTTCC
TTCTCAATATGTTGATCAAGCAGAGTTGGAAAAATATGATGGTGTAGCTGCTGGAAAGTATACCATTGGCTTGGGCCAGG
CCAAGATGGGCTTCTGCACGGATAGAGAAGATATTAACTCTCTTTGCATGACTGTGGTTCAGAATCTTATGGAGAGAAAT
AACCTTTCCTATGATTGCATTGGGCGGCTGGAAGTTGGAACAGAGACAATCATTGACAAATCAAAGTCTGTGAAGACTAA
TTTGATGCAGCTGTTTGAAGAGTCTGGGAATACAGATATAGAAGGAATTGACACAACTAATGCATGCTATGGAGGCACAG
CTGCTGTCTTCAATGCTGTTAACTGGATTGAGTCCAGCTCTTGGGATGGACGGTATGCCCTGGTAGTTGCAGGAGATATT
GCTGTATATGCCACAGGAAATGCTAGACCTACAGGTGGAGTTGGAGCAGTAGCTCTGCTAATTGGGCCAAATGCTCCTTT
AATTTTTGAACGAGGGCTTCGTGGGACACATATGCAACATGCCTATGATTTTTACAAGCCTGATATGCTATCTGAATATC
CTATAGTAGATGGAAAACTCTCCATACAGTGCTACCTCAGTGCATTAGACCGCTGCTATTCTGTCTACTGCAAAAAGATC
CGTGCCCAGTGGCAGAAAGAGGGAAATGATAAAGATTTTACCTTGAATGATTTTGGCTTCATGATCTTTCACTCACCATA
TTGTAAACTGGTTCAGAAATCTCTAGCTCGGATGTTGCTGAATGACTTCCTTAACGACCAGAATAGAGATAAAAATAGTA
TCTATAGTGGCCTGGAAGCCTTTGGGGATGTTAAATTAGAAGACACCTACTTTGATAGAGATGTGGAGAAGGCATTTATG
AAGGCTAGCTCTGAACTCTTCAGTCAGAAAACAAAGGCATCTTTACTTGTATCAAATCAAAATGGAAATATGTACACATC
TTCAGTATATGGTTCCCTTGCATCTGTTCTAGCACAGTACTCACCTCAGCAATTAGCAGGGAAGAGAATTGGAGTGTTTT
CTTATGGTTCTGGTTTGGCTGCCACTCTGTACTCTCTTAAAGTCACACAAGATGCTACACCGGGGTCTGCTCTTGATAAA
ATAACAGCAAGTTTATGTGATCTTAAATCAAGGCTTGATTCAAGAACTGGTGTGGCACCAGATGTCTTCGCTGAAAACAT
GAAGCTCAGAGAGGACACCCATCATTTGGTCAACTATATTCCCCAGGGCTCAATAGATTCACTCTTTGAAGGAACGTGGT
ACTTAGTTAGGGTGGATGAGAAGCACAGAAGAACTTACGCTCGGCGTCCCACTCCAAATGATGACACTTTGGATGAAGGA
GTAGGACTTGTGCATTCAAACATAGCAACTGAGCATATTCCAAGCCCTGCCAAGAAAGTACCAAGACTCCCTGCCACAGC
AGCAGAACCTGAAGCAGCTGTCATTAGTAATGGGGAACATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 81 .33 RPM |
| SRP007412_cerebellum | 34 .41 RPM |
| SRP007412_heart | 12 .94 RPM |
| SRP007412_kidney | 30 .50 RPM |
| SRP007412_liver | 46 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000001303 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000003583 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000112972 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000016845 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_361 | 77.30 | 93.46 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000015439 retrocopies