RetrogeneDB ID: | retro_etel_526 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_8799:5948..7003(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000011339 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGCS1 | ||
Ensembl ID: | ENSETEG00000003583 | ||
Aliases: | None | ||
Description: | 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) [Source:HGNC Symbol;Acc:5007] |
Percent Identity: | 71.94 % |
Parental protein coverage: | 72.51 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | PGSLPLNAEACWPKDVGIVALEIYFPSQYVDQSELEKYDGVDAGKYTIGLGQAKM-GFCTDREDINSLCL |
PG.LPL..EACWPKDV...ALEIYFPSQ.VDQS.L.KYD....GKYT.GLGQAKM.GF...REDINS.CL | |
Retrocopy | PGPLPLTMEACWPKDVEFFALEIYFPSQ*VDQS*L*KYD----GKYTAGLGQAKM<GFL-HREDINSICL |
Parental | TAVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAI |
T.VQ.LMERN.LSYDCIG.LEVG..TI..KSKSVK..L.QLFEE.GN..I.GID.TNAC..GTA..FNAI | |
Retrocopy | TVVQFLMERNDLSYDCIGQLEVGKQTINIKSKSVKIYLTQLFEEPGNSNIQGIDATNACCRGTAIIFNAI |
Parental | NWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDML |
NWIE.SSW..RY.L...GDIAVY.TGNARPT.GV.A..LLIG.NAPLIF..G.R.THMQHAYDF.KP.ML | |
Retrocopy | NWIEWSSWNERYTLIIIGDIAVYSTGNARPTSGVRAIDLLIGANAPLIFKGGIRATHMQHAYDF*KPNML |
Parental | SEYPIVDGKLSIQCYLSALDRCYYVYRK-KIRAQ-QKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARML |
.EY..V.GKLSIQC..S.L...Y.VY.K.KI.AQ.QK.G.DKDFTLND.GFMIFHS.YCKL.QKSLA.M. | |
Retrocopy | LEYHMVNGKLSIQCCPSVLGCFYFVYHK<KIQAQWQKKGQDKDFTLNDLGFMIFHSQYCKLAQKSLAQMQ |
Parental | LNDFLNDQNRDKNSVYSGLEXXXDVKLEDTYFDRDVEKAFMKASSELFNQKTKASLLVSNQIGNMYTS-S |
LNDFLNDQ.RDKNSV.S.LE....VKLEDTY.DRDVEKAFMKASSEL..QKTK....VSN..GNMYTS.S | |
Retrocopy | LNDFLNDQSRDKNSVCSVLEAFGTVKLEDTYSDRDVEKAFMKASSELLDQKTKGMFFVSNENGNMYTS>S |
Parental | VYGSLASVLA |
....LASVLA | |
Retrocopy | IRV*LASVLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001303 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003583 | 1 retrocopy |
retro_etel_526 ,
|
Echinops telfairi | ENSETEG00000005380 | 1 retrocopy | |
Homo sapiens | ENSG00000112972 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015439 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016845 | 1 retrocopy |