Parental gene:

CNOT7, ENSPPYG00000018385

Aliases:None
Description:CCR4-NOT transcription complex, subunit 7 [Source:HGNC Symbol;Acc:14101]
Organism:Orangutan (Pongo abelii)
Coordinates:8:16590560..16605899(-)


>ENSPPYG00000018385
ATGCCAGCGGCAACTGTAGATCATAGCCAAAGAATTTGTGAAGTTTGGGCTTGCAACTTGGATGAAGAGATGAAGAAAAT
TCGTCAAGTTATCCGAAAATATAATTACGTTGCTATGGACACCGAGTTTCCAGGTGTGGTTGCAAGACCCATTGGAGAAT
TCAGGAGCAATGCTGACTATCAATACCAACTATTGCGGTGTAATGTAGACTTGTTAAAGATAATTCAGCTAGGACTGACA
TTTATGAATGAGCAAGGAGAATACCCTCCAGGAACTTCAACTTGGCAGTTTAATTTTAAATTTAATTTGACGGAGGACAT
GTATGCCCAGGACTCTATAGAGCTACTAACAACATCTGGTATCCAGTTTAAAAAACATGAGGAGGAAGGAATTGAAACCC
AGTACTTTGCAGAACTTCTTATGACTTCTGGAGTGGTCCTCTGTGAAGGGGTCAAATGGTTGTCATTTCATAGCGGTTAC
GACTTTGGCTACTTAATCAAAATCCTAACCAACTCTAACTTGCCTGAAGAAGAACTTGACTTCTTTGAGATCCTTCGATT
GTTTTTTCCTGTCATTTATGATGTGAAGTACCTCATGAAGAGCTGCAAAAATCTCAAAGGTGGATTACAGGAGGTGGCAG
AACAGTTAGAGCTGGAACGGATAGGACCACAACATCAGGCAGGATCTGATTCATTGCTCACAGGAATGGCCTTTTTCAAA
ATGAGAGAAATGTTCTTTGAAGATCATATTGATGATGCCAAATATTGTGGTCATTTGTATGGCCTTGGTTCTGGTTCATC
CTATGTACAGAATGGCACAGGGAATGCATATGAAGAGGAAGCCAACAAGCAGTCATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .99 RPM
SRP007412_cerebellum 14 .11 RPM
SRP007412_heart 6 .68 RPM
SRP007412_kidney 12 .36 RPM
SRP007412_liver 9 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000677 ortholog_one2one 4 retrogenes
retro_chof_1431, retro_chof_1581, retro_chof_822, retro_chof_963,
Callithrix jacchus ENSCJAG00000011795 possible_ortholog 1 retrogene
retro_cjac_720,
Felis catus ENSFCAG00000000591 ortholog_one2one 1 retrogene
retro_fcat_1889,
Homo sapiens ENSG00000198791 ortholog_one2one 2 retrogenes
retro_hsap_211, retro_hsap_4851,
Macaca mulatta ENSMMUG00000001873 ortholog_one2one 1 retrogene
retro_mmul_2592,
Mustela putorius furo ENSMPUG00000017972 ortholog_one2one 1 retrogene
retro_mputfur_1596,
Nomascus leucogenys ENSNLEG00000002489 ortholog_one2one 2 retrogenes
retro_nleu_1860, retro_nleu_2373,
Oryctolagus cuniculus ENSOCUG00000014589 ortholog_one2many 1 retrogene
retro_ocun_118,
Otolemur garnettii ENSOGAG00000006324 ortholog_one2one 2 retrogenes
retro_ogar_1883, retro_ogar_505,
Sarcophilus harrisii ENSSHAG00000011828 possible_ortholog 2 retrogenes
retro_shar_103, retro_shar_631,
Ictidomys tridecemlineatus ENSSTOG00000009175 ortholog_one2one 2 retrogenes
retro_itri_1729, retro_itri_1730,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_428 89.16 70.88
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2. retro_pabe_3771 93.01 100.00
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Download FASTA sequences of all ENSPPYG00000018385 retrocopies