Parental gene:

RPL35, ENSPPYG00000019603

Aliases:None
Description:ribosomal protein L35 [Source:HGNC Symbol;Acc:10344]
Organism:Orangutan (Pongo abelii)
Coordinates:9:121751305..121756044(-)


>ENSPPYG00000019603
ATGGCCAAGATCAAGGCTCGAGATCTTCGTGGGAAGAAGAAGGAGGAGCTGCTGAAACAGCTGGACGACCTGAAGGTGGA
GCTGTCCCAGCTGCGCGTCGCCAAAGTGACAGGTGGTGCGGCCTCCAAGCTTTCTAAGATGTGGGTGGCTTGCACCCTGG
AGTGGCAGCCTCGTTGCTTGCTTCAGTCTCCTGGCTTGTATCGAGTCGTCCGGAAATCCATTGCCCGTGTTCTCACAGTT
ATTAACCAGACTCAGAAAGAAAACCTCAGGAAATTCTACAAGGGCAAGAAGTACAAGCCCCTGGACCTGCGGCCTAAGAA
GACACGCGCCATGCGCCGTCGGCTCAACAAGCACGAGGAGAACCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGT
ACCCGCTGCGGAAGTACGCGGTCAAGGCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 88 .69 RPM
SRP007412_cerebellum 57 .76 RPM
SRP007412_heart 65 .17 RPM
SRP007412_kidney 170 .74 RPM
SRP007412_liver 141 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016537 possible_ortholog 12 retrogenes
retro_amel_1010, retro_amel_1180, retro_amel_1341, retro_amel_1686, retro_amel_1746, retro_amel_1844, retro_amel_1887, retro_amel_351, retro_amel_584, retro_amel_819, retro_amel_893, retro_amel_94,
Bos taurus ENSBTAG00000003205 possible_ortholog 3 retrogenes
retro_btau_1060, retro_btau_1340, retro_btau_185,
Canis familiaris ENSCAFG00000020212 possible_ortholog 7 retrogenes
retro_cfam_1566, retro_cfam_1635, retro_cfam_2180, retro_cfam_294, retro_cfam_529, retro_cfam_738, retro_cfam_995,
Callithrix jacchus ENSCJAG00000006724 possible_ortholog 5 retrogenes
retro_cjac_1074, retro_cjac_1308, retro_cjac_1377, retro_cjac_2458, retro_cjac_387,
Cavia porcellus ENSCPOG00000022811 ortholog_one2many 1 retrogene
retro_cpor_414,
Equus caballus ENSECAG00000009389 ortholog_one2many 3 retrogenes
retro_ecab_1083, retro_ecab_115, retro_ecab_813,
Erinaceus europaeus ENSEEUG00000012696 ortholog_one2many 8 retrogenes
retro_eeur_144, retro_eeur_217, retro_eeur_225, retro_eeur_251, retro_eeur_319, retro_eeur_487, retro_eeur_533, retro_eeur_56,
Echinops telfairi ENSETEG00000000876 possible_ortholog 10 retrogenes
retro_etel_1013, retro_etel_1267, retro_etel_1383, retro_etel_1556, retro_etel_1848, retro_etel_1931, retro_etel_303, retro_etel_637, retro_etel_747, retro_etel_942,
Felis catus ENSFCAG00000030388 possible_ortholog 5 retrogenes
retro_fcat_1129, retro_fcat_1790, retro_fcat_1954, retro_fcat_397, retro_fcat_782,
Homo sapiens ENSG00000136942 ortholog_one2one 6 retrogenes
retro_hsap_1233, retro_hsap_326, retro_hsap_3579, retro_hsap_3832, retro_hsap_3867, retro_hsap_4026,
Gorilla gorilla ENSGGOG00000004111 possible_ortholog 3 retrogenes
retro_ggor_2581, retro_ggor_351, retro_ggor_966,
Loxodonta africana ENSLAFG00000010031 possible_ortholog 3 retrogenes
retro_lafr_128, retro_lafr_300, retro_lafr_642,
Microcebus murinus ENSMICG00000002922 ortholog_one2many 2 retrogenes
retro_mmur_1502, retro_mmur_215,
Myotis lucifugus ENSMLUG00000029323 possible_ortholog 3 retrogenes
retro_mluc_1495, retro_mluc_2392, retro_mluc_969,
Macaca mulatta ENSMMUG00000005260 possible_ortholog 5 retrogenes
retro_mmul_1304, retro_mmul_156, retro_mmul_1623, retro_mmul_1912, retro_mmul_265,
Monodelphis domestica ENSMODG00000019753 ortholog_one2many 1 retrogene
retro_mdom_1039,
Mustela putorius furo ENSMPUG00000013950 possible_ortholog 5 retrogenes
retro_mputfur_1136, retro_mputfur_1348, retro_mputfur_1478, retro_mputfur_1484, retro_mputfur_425,
Mus musculus ENSMUSG00000062997 possible_ortholog 1 retrogene
retro_mmus_236,
Nomascus leucogenys ENSNLEG00000017303 possible_ortholog 7 retrogenes
retro_nleu_1153, retro_nleu_1770, retro_nleu_1850, retro_nleu_1921, retro_nleu_2104, retro_nleu_2836, retro_nleu_953,
Ornithorhynchus anatinus ENSOANG00000011612 ortholog_one2many 1 retrogene
retro_oana_56,
Oryctolagus cuniculus ENSOCUG00000002996 possible_ortholog 4 retrogenes
retro_ocun_200, retro_ocun_238, retro_ocun_451, retro_ocun_791,
Otolemur garnettii ENSOGAG00000008513 ortholog_one2many 7 retrogenes
retro_ogar_1265, retro_ogar_1271, retro_ogar_1828, retro_ogar_2005, retro_ogar_2253, retro_ogar_2610, retro_ogar_2903,
Ochotona princeps ENSOPRG00000000406 ortholog_one2many 9 retrogenes
retro_opri_1077, retro_opri_1134, retro_opri_244, retro_opri_273, retro_opri_339, retro_opri_473, retro_opri_565, retro_opri_628, retro_opri_650,
Rattus norvegicus ENSRNOG00000014272 possible_ortholog 14 retrogenes
retro_rnor_1254, retro_rnor_126, retro_rnor_147, retro_rnor_1473, retro_rnor_1509, retro_rnor_1768, retro_rnor_1957, retro_rnor_205, retro_rnor_2183, retro_rnor_233, retro_rnor_2618, retro_rnor_2681, retro_rnor_2719, retro_rnor_451,
Sarcophilus harrisii ENSSHAG00000004756 ortholog_one2many 1 retrogene
retro_shar_775,
Sus scrofa ENSSSCG00000005595 ortholog_one2many 5 retrogenes
retro_sscr_1168, retro_sscr_214, retro_sscr_553, retro_sscr_679, retro_sscr_905,
Ictidomys tridecemlineatus ENSSTOG00000007901 possible_ortholog 1 retrogene
retro_itri_1735,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_165 96.75 100.00
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2. retro_pabe_1026 80.51 95.12
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3. retro_pabe_1718 93.94 80.49
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4. retro_pabe_2948 90.24 100.00
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5. retro_pabe_3064 81.82 89.43
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6. retro_pabe_3303 63.79 93.50
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7. retro_pabe_3304 63.79 93.50
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Download FASTA sequences of all ENSPPYG00000019603 retrocopies