Parental gene: | MCTS1, ENSPPYG00000020687 |
| Aliases: | None |
| Description: | malignant T cell amplified sequence 1 [Source:HGNC Symbol;Acc:23357] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | X:119632763..119641104(+) |
>ENSPPYG00000020687
ATGTTCAAGAAATTTGATGAAAAAGAAAATGTGTCCAACTGCATCCAGTTGAAAACTTCAGTTATTAAGGGTATTAAGAA
TCAATTGATAGAGCAATTTCCAGGTATTGAACCATGGCTTAATCAAATCATGCCTAAGAAAGATCCTGTCAAAATAGTCC
GATGCCATGAACATATAGAAATCCTTACAGTAAATGGAGAATTACTCTTTTTTAGACAAAGAGAAGGGCCTTTTTATCCA
ACCCTAAGATTACTTCACAAATATCCTTTTATCCTGCCACACCAGCAGGTTGATAAAGGAGCCATCAAATTTGTACTCAG
TGGAGCAAATATCATGTGTCCAGGCTTAACTTCTCCTGGAGCTAAGCTTTACCCTGCTGCAGTAGATACCGTTGTTGCTA
TCATGGCAGAAGGAAAACAGCATGCTCTATGTGTTGGAGTCATGAAGATGTCTGCAGAAGACATTGAGAAAGTCAACAAA
GGAATTGGCATTGAAAATATCCATTATTTAAATGATGGGCTGTGGCATATGAAGACATATAAATGA
ATGTTCAAGAAATTTGATGAAAAAGAAAATGTGTCCAACTGCATCCAGTTGAAAACTTCAGTTATTAAGGGTATTAAGAA
TCAATTGATAGAGCAATTTCCAGGTATTGAACCATGGCTTAATCAAATCATGCCTAAGAAAGATCCTGTCAAAATAGTCC
GATGCCATGAACATATAGAAATCCTTACAGTAAATGGAGAATTACTCTTTTTTAGACAAAGAGAAGGGCCTTTTTATCCA
ACCCTAAGATTACTTCACAAATATCCTTTTATCCTGCCACACCAGCAGGTTGATAAAGGAGCCATCAAATTTGTACTCAG
TGGAGCAAATATCATGTGTCCAGGCTTAACTTCTCCTGGAGCTAAGCTTTACCCTGCTGCAGTAGATACCGTTGTTGCTA
TCATGGCAGAAGGAAAACAGCATGCTCTATGTGTTGGAGTCATGAAGATGTCTGCAGAAGACATTGAGAAAGTCAACAAA
GGAATTGGCATTGAAAATATCCATTATTTAAATGATGGGCTGTGGCATATGAAGACATATAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 8 .68 RPM |
| SRP007412_cerebellum | 6 .32 RPM |
| SRP007412_heart | 5 .60 RPM |
| SRP007412_kidney | 7 .92 RPM |
| SRP007412_liver | 11 .35 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000034992 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000018545 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000015462 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000008448 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000015101 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000001407 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000000355 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000014315 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000011496 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1786 | 94.48 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1833 | 96.04 | 55.80 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000020687 retrocopies