Parental gene: | YRDC, ENSPTRG00000000557 |
| Aliases: | None |
| Description: | YrdC domain containing [Source:UniProtKB/TrEMBL;Acc:K7CSQ6] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 1:38038290..38043548(-) |
>ENSPTRG00000000557
ATGTCTCCGGCGCGTCGGTGCAGGGGGATGAGGGCCGCGGTGGCTGCCAGCGTGGGGTTGAGCGAGGGGCCTGCTGGCTC
CCGGAGCGGCCGCCTCTTCCGCCCGCCAAGTCCCGCTCCGGCGGCCCCCGGCGCCCGGCTGTTGCGGCTCCCGGAGAGCG
GGGCCGTGCAGGCCGCGAGCCCGGAGCGCGCCGGCTGGACCGAGGCGCTGCGGGCCGCCGTGGCCGAGCTGCGCGCCGGC
GCCGTGGTGGCCGTCCCCACCGATACGCTGTACGGCCTGGCCTGCGCGGCGAGCTGCTCGGCGGCTCTGCGCGCTGTGTA
CCGCCTCAAGGGTCGCAGCGAGGCCAAGCCTCTGGCCGTATGCCTCGGCCGCGTGGCCGACGTCTACAGATACTGCCGTG
TGAGAGTACCTGAGGGGCTCCTGAAAGACCTACTGCCAGGACCAGTGACCCTGGTGATGGAACGCTCGGAGGAGCTCAAC
AAGGACCTAAACCCTTTTACGCCTCTTGTAGGCATTCGGATTCCTGATCATGCCTTTATGCAAGACTTGGCTCAGATGTT
TGAGGGTCCGCTTGCTCTCACTAGTGCCAACCTCAGCTCCCAGGCCAGTTCTCTGAATGTCGAGGAGTTCCAGGATCTCT
GGCCTCAGTTGTCCTTGGTTATTGATGGGGGACAAATTGGGGATGGCCAGAGCCCCGAGTGTCGCCTTGGCTCAACTGTG
GTTGATTTGTCTGTGCCCGGAAAGTTTGGCATCATTCGTCCAGGCTGTGCCCTGGAAAGTACCACAGCCATCCTCCAACA
GAAGTACGGACTGCTCCCCTCACATGCGTCCTACCTGTGA
ATGTCTCCGGCGCGTCGGTGCAGGGGGATGAGGGCCGCGGTGGCTGCCAGCGTGGGGTTGAGCGAGGGGCCTGCTGGCTC
CCGGAGCGGCCGCCTCTTCCGCCCGCCAAGTCCCGCTCCGGCGGCCCCCGGCGCCCGGCTGTTGCGGCTCCCGGAGAGCG
GGGCCGTGCAGGCCGCGAGCCCGGAGCGCGCCGGCTGGACCGAGGCGCTGCGGGCCGCCGTGGCCGAGCTGCGCGCCGGC
GCCGTGGTGGCCGTCCCCACCGATACGCTGTACGGCCTGGCCTGCGCGGCGAGCTGCTCGGCGGCTCTGCGCGCTGTGTA
CCGCCTCAAGGGTCGCAGCGAGGCCAAGCCTCTGGCCGTATGCCTCGGCCGCGTGGCCGACGTCTACAGATACTGCCGTG
TGAGAGTACCTGAGGGGCTCCTGAAAGACCTACTGCCAGGACCAGTGACCCTGGTGATGGAACGCTCGGAGGAGCTCAAC
AAGGACCTAAACCCTTTTACGCCTCTTGTAGGCATTCGGATTCCTGATCATGCCTTTATGCAAGACTTGGCTCAGATGTT
TGAGGGTCCGCTTGCTCTCACTAGTGCCAACCTCAGCTCCCAGGCCAGTTCTCTGAATGTCGAGGAGTTCCAGGATCTCT
GGCCTCAGTTGTCCTTGGTTATTGATGGGGGACAAATTGGGGATGGCCAGAGCCCCGAGTGTCGCCTTGGCTCAACTGTG
GTTGATTTGTCTGTGCCCGGAAAGTTTGGCATCATTCGTCCAGGCTGTGCCCTGGAAAGTACCACAGCCATCCTCCAACA
GAAGTACGGACTGCTCCCCTCACATGCGTCCTACCTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 13 .53 RPM |
| SRP007412_cerebellum | 14 .55 RPM |
| SRP007412_heart | 2 .54 RPM |
| SRP007412_kidney | 12 .81 RPM |
| SRP007412_liver | 11 .82 RPM |
| SRP007412_testis | 15 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001173 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000009111 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000022522 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000011018 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000196449 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000007619 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005068 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000011953 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000000955 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005372 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011665 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000030474 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000001523 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000008863 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000005555 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2850 | 77.18 | 53.05 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2906 | 76.51 | 53.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2907 | 77.85 | 53.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2999 | 76.67 | 53.05 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000000557 retrocopies