RetrogeneDB ID: | retro_dnov_1774 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_29459:16230..16829(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YRDC | ||
Ensembl ID: | ENSDNOG00000009111 | ||
Aliases: | None | ||
Description: | yrdC domain containing (E. coli) [Source:HGNC Symbol;Acc:28905] |
Percent Identity: | 67.16 % |
Parental protein coverage: | 72.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ELRAGAVVAVPTDTLYGLACSASCSAALGAVYRLKGRCKAKPLAVCLGSVADVYRFCRVRVPKELLKDLL |
E..AG..V..PTD.LY.LACSA.CS.AL..V..LK...KA..L..CLG.....YR...VRVPKELLK.LL | |
Retrocopy | EVHAGTMVVTPTDMLYSLACSAVCSEALDTVCGLKCHNKAESLVICLGCMTAIYRHSHVRVPKELLKELL |
Parental | PGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQVFEGPLALTSANLSSQASSLNVKEFQDLWP |
P.P.TLVME.SE.LNKDLNPFTPLVG..IPDHAFM.DLAQVFEGPLALTS.NLSSQ..S........LW. | |
Retrocopy | PRPFTLVMECSETLNKDLNPFTPLVGTWIPDHAFMEDLAQVFEGPLALTSTNLSSQSVSSRTSSLSCLW- |
Parental | HLSLIIDGGPL-GDGQSPEYRLGSTVVDLSVPGKFGIIRPGCALESTTAILQQKYGLLPLDGSC |
..SLI...G.L.GDG.SPE..L.STVVDLSVP..FGII.PGCALESTTAILQ.KY.L.P.DGSC | |
Retrocopy | --SLIWGWGYL<GDGHSPECHLSSTVVDLSVPREFGIIHPGCALESTTAILQ*KYRLFPTDGSC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 6 .03 RPM |
SRP012922_cerebellum | 0 .00 RPM | 13 .61 RPM |
SRP012922_heart | 0 .00 RPM | 3 .71 RPM |
SRP012922_kidney | 0 .00 RPM | 10 .68 RPM |
SRP012922_liver | 0 .00 RPM | 4 .95 RPM |
SRP012922_lung | 0 .00 RPM | 8 .40 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .29 RPM |
SRP012922_spleen | 0 .11 RPM | 9 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001173 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009111 | 2 retrocopies |
retro_dnov_1774 , retro_dnov_2232,
|
Equus caballus | ENSECAG00000022522 | 1 retrocopy | |
Felis catus | ENSFCAG00000011018 | 1 retrocopy | |
Homo sapiens | ENSG00000196449 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007619 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005068 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011953 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000955 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005372 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011665 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030474 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001523 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000557 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000008863 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005555 | 3 retrocopies |