Parental gene:

TFAM, ENSPTRG00000002519

Aliases:None
Description:Pan troglodytes transcription factor A, mitochondrial (TFAM), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001194942]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:10:56726039..56736975(+)


>ENSPTRG00000002519
ATGGCGTTTCTCCGAAGCATGTGGGGCGTGCTGAGTGCCCTGGGAAGGTCTGGAGCAGAGCTGTGCACCGGCTGTGGAAG
TCGACTGCGCTCTCCCTTCAGTTTTGTGTATTTACCGAGGTGGTTTTCATCTGTCTTGGCAAGTTGTCCAAAGAAACCTG
TAAGTTCTTACCTTCGATTTTCTAAAGAACAACTACCCATATTTAAAGCTCAGAACCCAGATGCAAAAACTACAGAACTA
ATTAGAAGAATTGCCCAGCGTTGGAGGGAACTTCCTGATTCAAAGAAAAAAATATATCAAGATGCTTATAGGGCGGAGTG
GCAGGTATATAAAGAAGAGATAAGCAGATTTAAAGAACAGCTAACTCCAAGTCAGATTATGTCTTTGGAAAAAGAAATCA
TGGACAAACATTTAAAAAGGAAAGCTATGACAAAAAAAAAAGAGTTAACACTGCTTGGAAAACCAAAAAGACCTCGTTCA
GCTTATAACGTTTATGTAGCTGAAAGATTCCAAGAAGCTAAGGGTGATTCACCGCAGGAAAAGCTGAAGACTGTAAAGGA
AAACTGGAAAAATCTGTCTGACTCTGAAAAGGAATTATATATTCAGCATGCTAAAGAGGACGAAACTCGTTATCATAATG
AAATGAAGTCTTGGGAAGAACAAATGATTGAAGTTGGACGAAAGGATCTTCTACGTCGCACAATAAAGAAACAACGAAAA
TATGGTGCTGAGGAGTGTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .47 RPM
SRP007412_cerebellum 9 .89 RPM
SRP007412_heart 11 .45 RPM
SRP007412_kidney 11 .64 RPM
SRP007412_liver 9 .46 RPM
SRP007412_testis 189 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000000535 ortholog_one2one 1 retrogene
retro_dnov_536,
Dipodomys ordii ENSDORG00000014013 ortholog_one2one 2 retrogenes
retro_dord_415, retro_dord_691,
Erinaceus europaeus ENSEEUG00000006119 ortholog_one2one 3 retrogenes
retro_eeur_103, retro_eeur_182, retro_eeur_652,
Homo sapiens ENSG00000108064 ortholog_one2one 2 retrogenes
retro_hsap_3692, retro_hsap_923,
Gorilla gorilla ENSGGOG00000004948 ortholog_one2one 2 retrogenes
retro_ggor_2496, retro_ggor_745,
Loxodonta africana ENSLAFG00000012891 ortholog_one2one 1 retrogene
retro_lafr_1164,
Macropus eugenii ENSMEUG00000008802 ortholog_one2one 1 retrogene
retro_meug_190,
Macaca mulatta ENSMMUG00000019829 ortholog_one2one 1 retrogene
retro_mmul_1121,
Nomascus leucogenys ENSNLEG00000012295 ortholog_one2one 2 retrogenes
retro_nleu_2827, retro_nleu_288,
Oryctolagus cuniculus ENSOCUG00000014405 ortholog_one2one 1 retrogene
retro_ocun_1278,
Pongo abelii ENSPPYG00000002430 ortholog_one2one 2 retrogenes
retro_pabe_3042, retro_pabe_796,
Rattus norvegicus ENSRNOG00000000613 ortholog_one2one 1 retrogene
retro_rnor_1936,
Tursiops truncatus ENSTTRG00000009246 ortholog_one2one 1 retrogene
retro_ttru_1763,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_641 63.27 98.78
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Download FASTA sequences of all ENSPTRG00000002519 retrocopies