Parental gene:

PRDX5, ENSPTRG00000003835

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:62241100..62244779(+)


>ENSPTRG00000003835
ATGGGACTAGCTGGCGTGTGCGCCCTGAGACGCTCAGCGGGCTATATACTCGTCGGTGGGGCCGGCGGTCAGTCTGCGGC
AGCGGCAGCAAGACGGTGCAGTGAAGGAGGGTGGGCGTCTGGCGGGGTCCGCAGTTTCAGCAGAGCCGCTGCAGCCATGG
CCCCAATCAAGGTGGGAGATGCCATCCCAGCAGTGGAGGTGTTTGAAGGGGAGCCAGGGAACAAGGTGAACCTGGCAGAG
CTGTTCAAGGGCAAGAAGGGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGATGTTCCAAGACCCACCTGCCAGG
GTTTGTGGAGCAGGCTGAGGCTCTGAAGGCCAAGGGAGTCCAGGTGGTGGCCTGTCTGAGTGTTAATGATGCCTTTGTGA
CTGGCGAGTGGGGCCGAGCCCACAAGGCGGAAGGCAAGGTTCGGCTCCTGGCTGATCCCACTGGGGCCTTTGGGAAGGAG
ACAGACTTATTACTAGATGATTCGCTGGTGTCCATCTTTGGGAATCGACGTCTCAAGAGGTTCTCCATGGTGGTACAGGA
TGGCATAGTGAAGGCCCTGAATGTGGAACCAGATGGCACAGGCCTCACCTGCAGCCTGGCACCCAATATCATCTCACAGC
TCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 67 .01 RPM
SRP007412_cerebellum 68 .47 RPM
SRP007412_heart 38 .06 RPM
SRP007412_kidney 175 .35 RPM
SRP007412_liver 123 .31 RPM
SRP007412_testis 46 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017959 ortholog_one2one 1 retrogene
retro_amel_753,
Bos taurus ENSBTAG00000008648 ortholog_one2one 1 retrogene
retro_btau_1364,
Callithrix jacchus ENSCJAG00000018014 ortholog_one2many 1 retrogene
retro_cjac_3013,
Dasypus novemcinctus ENSDNOG00000004647 ortholog_one2one 1 retrogene
retro_dnov_2664,
Equus caballus ENSECAG00000017747 ortholog_one2one 2 retrogenes
retro_ecab_823, retro_ecab_844,
Echinops telfairi ENSETEG00000000264 ortholog_one2one 3 retrogenes
retro_etel_1821, retro_etel_662, retro_etel_740,
Felis catus ENSFCAG00000028856 ortholog_one2many 3 retrogenes
retro_fcat_1189, retro_fcat_410, retro_fcat_727,
Homo sapiens ENSG00000126432 ortholog_one2one 1 retrogene
retro_hsap_408,
Gorilla gorilla ENSGGOG00000001337 ortholog_one2one 1 retrogene
retro_ggor_404,
Loxodonta africana ENSLAFG00000025661 ortholog_one2one 2 retrogenes
retro_lafr_132, retro_lafr_250,
Macaca mulatta ENSMMUG00000013397 ortholog_one2one 1 retrogene
retro_mmul_504,
Mustela putorius furo ENSMPUG00000012907 ortholog_one2one 1 retrogene
retro_mputfur_1360,
Nomascus leucogenys ENSNLEG00000005003 ortholog_one2one 2 retrogenes
retro_nleu_1007, retro_nleu_2228,
Procavia capensis ENSPCAG00000010811 ortholog_one2one 1 retrogene
retro_pcap_144,
Pongo abelii ENSPPYG00000003106 ortholog_one2one 1 retrogene
retro_pabe_310,
Sus scrofa ENSSSCG00000013030 ortholog_one2one 2 retrogenes
retro_sscr_1041, retro_sscr_888,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_313 55.11 80.84
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Download FASTA sequences of all ENSPTRG00000003835 retrocopies