Parental gene: | LRRC57, ENSPTRG00000006976 |
| Aliases: | None |
| Description: | leucine rich repeat containing 57 [Source:HGNC Symbol;Acc:26719] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 15:39537645..39543944(-) |
>ENSPTRG00000006976
ATGGGAAACAGTGCGCTCCGCGCTCATGTGGAAACGGCGCAGAAAACTGGTGTCTTTCAGCTTAAGGACCGAGGGCTGAC
CGAGTTCCCCGCAGACTTGCAGAAGCTGACGAGCAATCTCAGGACAATCGACTTGTCCAACAACAAGATCGAAAGCCTAC
CGCCTTTGCTGATAGGAAAGTTCACTCTGCTGAAGAGCCTCTCCCTGAACAACAACAAACTGACTGTTCTGCCTGATGAG
ATATGCAATCTGAAAAAACTAGAGACGCTAAGCCTAAACAACAATCACCTTAGAGAGCTGCCGTCTACCTTTGGGCAACT
CTCTGCCCTCAAGACCCTGAGCCTCTCTGGGAACCAACTGGGAGCATTACCTCCCCAACTTTGTAGCCTACGGCACCTAG
ATGTGATGGATCTCTCTAAGAACCAGATTCGAAGTATACCTGACTCAGTGGGAGAGCTGCAAGTCATCGAACTCAACCTC
AACCAGAATCAGATATCTCAGATCTCAGTGAAGATATCTTGCTGTCCACGCCTTAAAATTCTTCGCCTGGAAGAGAATTG
TCTTGAGCTCAGCATGCTTCCCCAGAGCATCCTCAGTGATTCCCAGATCTGTCTGCTTGCTGTGGAAGGCAATCTTTTTG
AAATAAAGAAACTTCGAGAACTGGAAGGCTATGATAAGTACATGGAGAGGTTCACAGCCACCAAGAAGAAGTTTGCGTGA
ATGGGAAACAGTGCGCTCCGCGCTCATGTGGAAACGGCGCAGAAAACTGGTGTCTTTCAGCTTAAGGACCGAGGGCTGAC
CGAGTTCCCCGCAGACTTGCAGAAGCTGACGAGCAATCTCAGGACAATCGACTTGTCCAACAACAAGATCGAAAGCCTAC
CGCCTTTGCTGATAGGAAAGTTCACTCTGCTGAAGAGCCTCTCCCTGAACAACAACAAACTGACTGTTCTGCCTGATGAG
ATATGCAATCTGAAAAAACTAGAGACGCTAAGCCTAAACAACAATCACCTTAGAGAGCTGCCGTCTACCTTTGGGCAACT
CTCTGCCCTCAAGACCCTGAGCCTCTCTGGGAACCAACTGGGAGCATTACCTCCCCAACTTTGTAGCCTACGGCACCTAG
ATGTGATGGATCTCTCTAAGAACCAGATTCGAAGTATACCTGACTCAGTGGGAGAGCTGCAAGTCATCGAACTCAACCTC
AACCAGAATCAGATATCTCAGATCTCAGTGAAGATATCTTGCTGTCCACGCCTTAAAATTCTTCGCCTGGAAGAGAATTG
TCTTGAGCTCAGCATGCTTCCCCAGAGCATCCTCAGTGATTCCCAGATCTGTCTGCTTGCTGTGGAAGGCAATCTTTTTG
AAATAAAGAAACTTCGAGAACTGGAAGGCTATGATAAGTACATGGAGAGGTTCACAGCCACCAAGAAGAAGTTTGCGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 9 .24 RPM |
| SRP007412_cerebellum | 6 .70 RPM |
| SRP007412_heart | 6 .50 RPM |
| SRP007412_kidney | 8 .05 RPM |
| SRP007412_liver | 3 .93 RPM |
| SRP007412_testis | 5 .37 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006482 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000002991 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000180979 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000009597 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000005465 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000001544 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004485 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007751 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002325 | other_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000009143 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000048310 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1649 | 65.79 | 93.72 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1650 | 66.23 | 93.72 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000006976 retrocopies