Parental gene:

LRRC57, ENSCJAG00000002991

Aliases:None
Description:leucine rich repeat containing 57 [Source:HGNC Symbol;Acc:26719]
Organism:Marmoset (Callithrix jacchus)
Coordinates:GL286400.1:1123751..1128787(-)


>ENSCJAG00000002991
ATGGGAAACAGTGCCCTTCGCGCTCATGTGGAAACGGCGCAGAAAACTGGTGTCTTTCAGCTTAAGGACCGAGGGATGAC
CGAGTTCCCCGCAGACTTGCAGAAGCTGACGAGCAATCTCAGAACCATCGACTTGTCCAACAACAAGATCGAGAGCCTAC
CGCCTTTGCTGATAGGAAAGTTCACTCTGCTGAAGAGCCTCTCCCTGAACAACAACAAACTGACTGTTCTGCCTGATGAG
ATATGCAGTCTGAAAAAACTAGAGACACTAAGCCTAAACAACAATCACCTGAGAGAACTGCCGTCTACCTTTGGGCAACT
CTCTGCCCTCAAGACCCTGAGCCTCTCTGGGAACCAACTGGGAGCACTGCCTCCCCAACTTTGTACCCTACGGCATCTGG
ATGTGGTGGATCTCTCTAAGAACCAGATTCGAAGTATACCTGACACAGTGGGACAGCTGCAGGTCATCGAACTCAACCTC
AACCAGAATCAGATATCTCAGATCTCAGTAAAGATATCTTGTTGTCCTCGCCTTAAAATTCTTCGCCTGGAAGAGAATTG
TCTTGAGCTCAGTATGCTTCCACAGAGCATCCTCAGTGATTCCCAGATCTGTCTGCTTGCTGTGGAAGGCAATCTTTTTG
AAATAAAGAAACTTCGAGAACTGGAAGGCTATGATAAGTACATGGAGAGGTTCACAGCCACCAAGAAGAAGTTTGCATGA

Library Parental gene expression (RPM)
SRP051959_spleen 2 .27 RPM
SRP051959_skeletal_muscle 2 .34 RPM
SRP051959_lymph_node 2 .58 RPM
SRP051959_lung 4 .28 RPM
SRP051959_liver 1 .45 RPM
SRP051959_kidney 2 .55 RPM
SRP051959_heart 3 .23 RPM
SRP051959_colon 1 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006482 ortholog_one2one 1 retrogene
retro_chof_2306,
Callithrix jacchus ENSCJAG00000016965 other_paralog 1 retrogene
retro_cjac_2430,
Homo sapiens ENSG00000180979 ortholog_one2one 1 retrogene
retro_hsap_2163,
Gorilla gorilla ENSGGOG00000009597 ortholog_one2one 1 retrogene
retro_ggor_1718,
Loxodonta africana ENSLAFG00000005465 ortholog_one2one 2 retrogenes
retro_lafr_1027, retro_lafr_767,
Macaca mulatta ENSMMUG00000001544 ortholog_one2one 1 retrogene
retro_mmul_901,
Nomascus leucogenys ENSNLEG00000004485 ortholog_one2one 1 retrogene
retro_nleu_1812,
Otolemur garnettii ENSOGAG00000007751 ortholog_one2one 1 retrogene
retro_ogar_3437,
Pan troglodytes ENSPTRG00000006976 ortholog_one2one 2 retrogenes
retro_ptro_1649, retro_ptro_1650,
Rattus norvegicus ENSRNOG00000009143 ortholog_one2many 1 retrogene
retro_rnor_796,
Rattus norvegicus ENSRNOG00000048310 ortholog_one2many 1 retrogene
retro_rnor_1732,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2819 68.63 63.18
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Download FASTA sequences of all ENSCJAG00000002991 retrocopies