Parental gene:

PES1, ENSPTRG00000014251

Aliases:None
Description:Pan troglodytes pescadillo ribosomal biogenesis factor 1 (PES1), mRNA. [Source:RefSeq mRNA;Acc:NM_001246365]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:22:29251424..29266723(-)


>ENSPTRG00000014251
ATGGGAGGCCTTGAGAAGAAGAAGTATGAACGAGGCTCGGCCACTAACTACATCACCCGGAACAAAGCCCGGAAGAAGCT
CCAGCTGAGCTTGGCTGACTTTAGGCGGCTGTGCATTCTGAAGGGCATTTATCCCCATGAACCCAAACACAAGAAGAAGG
TTAACAAGGGTTCTACAGCAGCCCGAACGTTTTACCTTATCAAAGACATCAGGTTTCTCCTCCACGAACCCATCGTCAAC
AAGTTCCGGGAATACAAGGTGTTCGTCCGGAAGCTCCGGAAGGCTTATGGGAAGAGCGAGTGGAACACTGTAGAGCGTTT
AAAGGACAATAAGCCCAACTACAAACTTGACCACATCATCAAGGAACGGTACCCCACGTTCATCGATGCCCTGCGGGACC
TGGACGATGCCCTCTCCATGTGCTTCCTGTTTTCCACCTTCCCACGGACTGGCAAGTGCCACGTGCAGACCATTCAGCTG
TGCCGCCGGCTCACTGTGGAGTTCATCCACTACATTATTGCTGCCCGTGCCCTGCGCAAGGTCTTCCTGTCCATCAAAGG
CATTTACTACCAGGCCGAGGTACTGGGGCAGCCCATCGTGTGGATCACTCCCTATGCCTTCTCCCATGACCACCCGACAG
ACGTGGACTACAGGGTCATGGCCACCTTCACCGAGTTCTACACCACGCTGCTGGGCTTTGTCAATTTCCGCCTTTACCAG
TTGCTCAACCTCCACTATCCCCCGAAGCTCGAGGGTCAGGCCCAAGCAGAGGCAAAGGCCAGTGAGGGCACCTACGCATT
GGACTCCGAGAGCTCTATGGAGAAACTGGCAGCCCTCAGTGCCAGCCTGGCCCGCGTGGTGGTGCCTGCCACAGAGGAGG
AGGCTGAGGTGGATGAGTTTCCCACTGATGGGGAGATGTCAGCGCAGGAGGAAGACCGCAGGAAGGAGCTGGAGGCGCAG
GAGAAGCACAAGAAGCTTTTTGAGGGCCTGAAGTTCTTCCTGAACCGAGAGGTGCCCCGTGAGGCCCTGGCCTTCATCAT
CAGGAGTTTTGGGGGGGAAGTGTCCTGGGACAAATCTTTGTGCATTGGGGCCACCTATGACGTCACAGACTCCCGCATCA
CCCACCAGATTGTCGACCGGCCTGGGCAGCAGACCTCAGTCATTGGCAGGTGCTACGTGCAGCCCCAGTGGGTGTTTGAC
TCAGTGAACGCCAGGCTCCTTCTCCCCGTGGCAGAGTACTTCCCTGGGGTGCAGCTGCCCCCACACCTTTCACCCTTTGT
GACCGAGAAGGAAGGAGATTACGTTCCACCTGAGAAGCTGAAGCTGCTGGCTCTGCAGCGGGGAGAGGACCCAGGAAACC
TGAATGAGTCAGAAGAGGAGGAGGAAGAGGACGACAACAACGAAGGTGATGGTGATGAAGAGGGAGAAAATGAGGAGGAG
GAGGAAGATGCAGAGGCTGGTTCAGAAAAGGAGGAAGAGGCCCGGCTGGCAGCCCTGGAAGAGCAGAGGATGGAGGGGAA
GAAGCCCAGGGTGATGGCAGGCACCTTGAAGCTGGAGGATAAGCAGCGGCTGGCCCAGGAGGAGGAGAGTGAGGCCAAGC
GCCTGGCCATTATGATGATGAAGAAGCGGGAGAAGTACCTGTACCAGAAGATCATGTTTGGCAAGAGGCGAAAAATCCGA
GAGGCCAACAAGCTGGCGGAGAAGCGGAAAGCCCACGATGAGGCGGTGAGGTCTGAGAAGAAGGCCAAGAAGGCAAGGCC
AGAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 38 .14 RPM
SRP007412_cerebellum 48 .40 RPM
SRP007412_heart 12 .94 RPM
SRP007412_kidney 43 .67 RPM
SRP007412_liver 87 .40 RPM
SRP007412_testis 72 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010617 ortholog_one2one 1 retrogene
retro_cjac_3182,
Cavia porcellus ENSCPOG00000003565 possible_ortholog 1 retrogene
retro_cpor_986,
Homo sapiens ENSG00000100029 ortholog_one2one 1 retrogene
retro_hsap_4133,
Otolemur garnettii ENSOGAG00000005804 ortholog_one2one 1 retrogene
retro_ogar_1719,
Pongo abelii ENSPPYG00000011716 ortholog_one2one 1 retrogene
retro_pabe_3471,
Rattus norvegicus ENSRNOG00000004515 possible_ortholog 2 retrogenes
retro_rnor_2953, retro_rnor_824,
Tupaia belangeri ENSTBEG00000009825 ortholog_one2one 1 retrogene
retro_tbel_1000,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2018 69.97 64.63
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2. retro_ptro_2809 83.17 53.40
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Download FASTA sequences of all ENSPTRG00000014251 retrocopies