>retro_cjac_3182
ATGGGAGGCCTTGAGAAGAAGAAGTATGAACGAGGCTCAGCCACCAACTACATCACCCTGAACAAAGCCCGGAAGAAGCT
CCAGCTGAGCCTGGCTGACTTTAGGCGGCTGTGCATTCTGAAGGGCATTTATCCCCATGAACCCAAACACAAGAAGAAGG
TTAACAAGGGTTTTACAGCGGCCTGAACTTTTTACCTTATCAAAGACATCAGGTTTCTCCTCCATGAACCCATCGTCAAC
AAGTTCCGGGAATACAAGGTGTTCGTCCAGAAGCTCTGGAAGGCCTATGGGAAGAGCGAGTGGAACACCGTAGAGTGTCT
AAAGGACAATAAGCCCAACTACAAACTTGACCTCATCATCAAGGAACGGTACCCCACGTTCATTGATGCCCTGCGCGACC
TGGACGACGCCCTCTCCATGTGCTTCCTCTTTTCCACCTTCCCACGGACTGGCAAGTGTCACGTGCAGACCATTCAGCTG
TGCCGCCGGCTCACCGTGGAGTTCATGCATACATCATTGCCTCCTGTGCCCTGCGCAAGGTCTTCCTGTCCATCAAAGGC
ATTTACTACCAGGCCAAGGTGCTGGGGCAGCCCATCGTGTGGATCACTCCCTATGCCTTCTCCCATGACCACCCAACAGA
TGTGGACTACAGGGTCATGGCCACCTTCACTGAGTTCTACACCACCCTGCTGGGCTTCGTCAACTTCTGCCTCTACCAGT
TGCTCAACCTCCACTACCCCCCAAAGCTCGAGGGACAGGCCCCGGCAGAGGTGAAGGCCAGTGAGGACGCCTACGGCGCT
GGACTCTGAGAGCTCTATGGAGAAACTGGTGGCCCTCAGTGCCAGCCTGGCTCGTGTGGTGGTACCTGCCATGGAAGAGG
AGGCCGAGGTGGATGAGTTTCCTGCCGATGGGGAGATGTCGGCACAAGAGGAAGACCGCAGGAAGGAGCTGGAGGCGCAG
GAGAAGCACAAGAAGCTTTTTGAGGGCCTGACGTTCTTCCTGAACTGAGAGGTGCCCCGCGAGGCCCTGGCCTTCATCAT
CAGGAGTTTTGGGGGGAAAGGGTCCTGGGACAAATCTTTGTGCATTGGGGCCACCTACGACGTCACGGACTCCCGCATCA
CTCACCAGATTGTCGACCGGCCTGGGCAGCAGACCCCTGTCATAGGCAGGTGCTACATGCAGCCCCAGTGGGTGTTTGAC
TCAGTGAACGCTAGGCTCCTCCTCCCCGTGGCAGAGTACTTCCCTGGGGTGCAGCTCCCCCCACACCTTTCACCCTTTGT
GACTGAGAAGGAAGGAGATTATGTCCCACCTGACTGGCTC
ORF - retro_cjac_3182 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.8 % |
Parental protein coverage: |
74.58 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTAARTFYLIKDI |
| MGGLEKKKYERGSATNYIT.NKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKG.TAA.TFYLIKDI |
Retrocopy | MGGLEKKKYERGSATNYITLNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGFTAA*TFYLIKDI |
|
Parental | RFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIIKERYPTFIDALRDLDDALSM |
| RFLLHEPIVNKFREYKVFV.KL.KAYGKSEWNTVE.LKDNKPNYKLD.IIKERYPTFIDALRDLDDALSM |
Retrocopy | RFLLHEPIVNKFREYKVFVQKLWKAYGKSEWNTVECLKDNKPNYKLDLIIKERYPTFIDALRDLDDALSM |
|
Parental | CFLFSTFPRTGKCHVQTIQLCRRLTVEFMH-YIIASRALRKVFLSIKGIYYQAEVLGQPIVWITPYAFSH |
| CFLFSTFPRTGKCHVQTIQLCRRLTVEFMH.YIIAS.ALRKVFLSIKGIYYQA.VLGQPIVWITPYAFSH |
Retrocopy | CFLFSTFPRTGKCHVQTIQLCRRLTVEFMH<YIIASCALRKVFLSIKGIYYQAKVLGQPIVWITPYAFSH |
|
Parental | DHPTDVDYRVMATFTEFYTTLLGFVNFRLYQSLNLHYPPKLEGQAQAEVKASEDTY-ALDSESSMEKLAA |
| DHPTDVDYRVMATFTEFYTTLLGFVNF.LYQ.LNLHYPPKLEGQA.AEVKASED.Y.ALDSESSMEKL.A |
Retrocopy | DHPTDVDYRVMATFTEFYTTLLGFVNFCLYQLLNLHYPPKLEGQAPAEVKASEDAY>ALDSESSMEKLVA |
|
Parental | LSASLARVVVPAMEEEAEVDEFPADGEMSAQEEDRRKELEAQEKHKKLFEGLKFFLNREVPREALAFIIR |
| LSASLARVVVPAMEEEAEVDEFPADGEMSAQEEDRRKELEAQEKHKKLFEGL.FFLN.EVPREALAFIIR |
Retrocopy | LSASLARVVVPAMEEEAEVDEFPADGEMSAQEEDRRKELEAQEKHKKLFEGLTFFLN*EVPREALAFIIR |
|
Parental | SFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQTPVIGRCYVQPQWVFDSVNARLLLPVAEYFPGVQ |
| SFGG..SWDKSLCIGATYDVTDSRITHQIVDRPGQQTPVIGRCY.QPQWVFDSVNARLLLPVAEYFPGVQ |
Retrocopy | SFGGKGSWDKSLCIGATYDVTDSRITHQIVDRPGQQTPVIGRCYMQPQWVFDSVNARLLLPVAEYFPGVQ |
|
Parental | LPPHLSPFVTEKEGDYVPPEKL |
| LPPHLSPFVTEKEGDYVPP..L |
Retrocopy | LPPHLSPFVTEKEGDYVPPDWL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .04 RPM |
16 .02 RPM |
SRP051959_heart |
0 .02 RPM |
14 .54 RPM |
SRP051959_kidney |
0 .02 RPM |
23 .10 RPM |
SRP051959_liver |
0 .04 RPM |
15 .60 RPM |
SRP051959_lung |
0 .02 RPM |
17 .10 RPM |
SRP051959_lymph_node |
0 .02 RPM |
17 .42 RPM |
SRP051959_skeletal_muscle |
0 .00 RPM |
23 .15 RPM |
SRP051959_spleen |
0 .00 RPM |
18 .66 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_3182 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_3182 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_3182 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
8 parental genes, and
10 retrocopies.