Parental gene:

MSMO1, ENSPTRG00000016574

Aliases:MSMO1, SC4MOL
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:4:168384367..168405882(+)


>ENSPTRG00000016574
ATGGCAACAAATGAAAGTGTCAGCATCTTTAGTTCAGCATCCTTGGCTGTGGAATATGTAGATTCACTTTTACCTGAGAA
TCCTCTGCAAGAACCATTTAAAAATGCTTGGAACTATATGTTGAATAATTATACAAAGTTCCAGATTGCAACATGGGGAT
CCCTTATAGTTCATGAAGCCCTTTATTTCTTGTTCTGTTTACCTGGATTTTTATTTCAATTTATACCTTATATGAAAAAA
TACAAAATTCAAAAGGATAAGCCAGAGACATGGGAAAACCAATGGAAGTGTTTCAAAGTTCTTCTCTTTAATCACTTCTG
TATCCAGCTGCCTTTGATTTGTGGAACCTATTATTTTACAGAGTATTTCAATATTCCTTATGATTGGGAAAGAATGCCAA
GATGGTATTTTCTTTTGGCAAGATGCTTTGGTTGTGCAGTCATTGAAGATACGTGGCACTATTTTCTGCATAGACTCTTA
CACCACAAAAGAATATACAAGTATATTCATAAAGTTCATCATGAGTTTCAGGCTCCATTTGGAATGGAAGCTGAATATGC
ACATCCTTTGGAGACTCTAATTCTTGGAACTGGATTTTTCATTGGAATCGTGCTTTTGTGTGATCATGTAATTCTTCTTT
GGGCATGGGTGACCATTCGTTTATTAGAAACTATTGATGTCCATAGTGGTTATGATATTCCTCTCAACCCTTTAAATCTG
ATCCCTTTCTATGCTGGTTCTCGGCATCACGATTTCCACCACATGAACTTCATTGGAAACTATGCTTCAACATTTACATG
GTGGGATCGAATTTTTGGAACAGACTCTCAGTATAATGCCTATAATGAAAAGAGGAAGAAGTTTGAGAAAAAGACTGAAT
AA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 21 .86 RPM
SRP007412_cerebellum 7 .24 RPM
SRP007412_heart 1 .54 RPM
SRP007412_kidney 23 .59 RPM
SRP007412_liver 48 .58 RPM
SRP007412_testis 7 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005596 ortholog_one2one 1 retrogene
retro_amel_447,
Choloepus hoffmanni ENSCHOG00000007550 ortholog_one2many 2 retrogenes
retro_chof_1657, retro_chof_560,
Callithrix jacchus ENSCJAG00000009301 ortholog_one2one 1 retrogene
retro_cjac_2245,
Felis catus ENSFCAG00000023004 ortholog_one2one 1 retrogene
retro_fcat_863,
Homo sapiens ENSG00000052802 ortholog_one2one 1 retrogene
retro_hsap_4672,
Gorilla gorilla ENSGGOG00000015730 ortholog_one2one 1 retrogene
retro_ggor_2898,
Loxodonta africana ENSLAFG00000007061 ortholog_one2many 1 retrogene
retro_lafr_570,
Macaca mulatta ENSMMUG00000012994 ortholog_one2one 1 retrogene
retro_mmul_2486,
Nomascus leucogenys ENSNLEG00000006501 ortholog_one2one 1 retrogene
retro_nleu_2164,
Oryctolagus cuniculus ENSOCUG00000003769 ortholog_one2one 1 retrogene
retro_ocun_1454,
Otolemur garnettii ENSOGAG00000009281 ortholog_one2many 2 retrogenes
retro_ogar_182, retro_ogar_3404,
Pteropus vampyrus ENSPVAG00000013707 ortholog_one2one 4 retrogenes
retro_pvam_1405, retro_pvam_550, retro_pvam_598, retro_pvam_784,
Sorex araneus ENSSARG00000013546 ortholog_one2one 1 retrogene
retro_sara_635,
Sarcophilus harrisii ENSSHAG00000000135 ortholog_one2one 1 retrogene
retro_shar_530,
Tursiops truncatus ENSTTRG00000012897 ortholog_one2many 2 retrogenes
retro_ttru_20, retro_ttru_801,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3104 74.05 52.90
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Download FASTA sequences of all ENSPTRG00000016574 retrocopies