RetrogeneDB ID: | retro_pvam_550 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_3693:63601..64225(-) | ||
Located in intron of: | ENSPVAG00000011223 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MSMO1 | ||
Ensembl ID: | ENSPVAG00000013707 | ||
Aliases: | None | ||
Description: | methylsterol monooxygenase 1 [Source:HGNC Symbol;Acc:10545] |
Percent Identity: | 72.99 % |
Parental protein coverage: | 70.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | NVSIFSSASLAVEYVDSLLPENPLQEPFKNAWNYMLDNYTKFQIATWGSLIIHEVIYFLFSLPGFLFQFI |
.VSIF.S.SLAVEYVDSLLPEN.LQEPFKNAWNY.LDNYT..QIATWGSL..HE..YFLF.LPGFLFQFI | |
Retrocopy | SVSIFISVSLAVEYVDSLLPENSLQEPFKNAWNYTLDNYTISQIATWGSLVVHEALYFLFCLPGFLFQFI |
Parental | PYMKK-YKIQKDKPETWEGQWKCFKVLLFNHFCIQFPLICGTYYF-TEYFNIPYDWETMPRWYLLLARCF |
PYMKK.YKIQKDK.ETWE.QW...KVLLFNHFCIQ.PLICGT.Y.......IPYDWE.MP.WY.L....F | |
Retrocopy | PYMKK>YKIQKDKLETWEKQWQYLKVLLFNHFCIQLPLICGT-YY>LQSISIPYDWERMPTWYMLWTGWF |
Parental | GCAVIEDTWHYFLHRLLHHK-RIYKYIHKIHHEFQAP-GMEAEYAHPLETLILGTGFFMGIILLCDHVVL |
G...I.DTWHYFL.RL..H...IYK.IHK.HHEFQA..G.EAEY...LETLILGTGFF.GI.LLCD..V. | |
Retrocopy | GYEIIKDTWHYFLNRLFLHN>KIYKCIHKTHHEFQATFGTEAEYTRLLETLILGTGFFIGIMLLCDYIVF |
Parental | L |
L | |
Retrocopy | L |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005596 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007550 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009301 | 1 retrocopy | |
Felis catus | ENSFCAG00000023004 | 1 retrocopy | |
Homo sapiens | ENSG00000052802 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015730 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007061 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012994 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006501 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003769 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009281 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016574 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013707 | 4 retrocopies | |
Sorex araneus | ENSSARG00000013546 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000000135 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012897 | 2 retrocopies |