Parental gene:

ENSPTRG00000018063

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:34842251..34851278(-)


>ENSPTRG00000018063
ATGTTGATGCCTAAGAAGAACCGGATTGCCATTTATGAACTCCTTTTTAAGGAGGGAGTCATGGTGGCCAAGAAGGATGT
CCACATGCCTAAGCACCCGGAGCTGGCAGACAAGAATGTGCCCAACCTTCATGTCATGAAGGCCATGCAGTCTCTCAAGT
CCCGAGGCTACGTGAAGGAACAGTTTGCCTGGAGACATTTCTACTGGTACCTTACCAATGAGGGTATCCAGTATCTCCGT
GATTACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGCCGTAGCCGTCCAGAGACTGGCAGGCCTCGGCCTAA
AGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCAC
CTGGTGCCGACAAGAAAGCCGAGGCTGGGGCTGGGTCAGCAACCGAATTCCAGTTTGTCCTCATAGCACAGGATTGCTCT
CAGATAATGTCATTTGTAAAAAGGAAGCATGTACAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 119 .62 RPM
SRP007412_cerebellum 39 .25 RPM
SRP007412_heart 22 .44 RPM
SRP007412_kidney 89 .67 RPM
SRP007412_liver 35 .75 RPM
SRP007412_testis 17 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001214 possible_ortholog 2 retrogenes
retro_cfam_1, retro_cfam_92,
Callithrix jacchus ENSCJAG00000015250 possible_ortholog 4 retrogenes
retro_cjac_215, retro_cjac_296, retro_cjac_325, retro_cjac_63,
Cavia porcellus ENSCPOG00000008613 possible_ortholog 2 retrogenes
retro_cpor_1245, retro_cpor_345,
Dasypus novemcinctus ENSDNOG00000011670 ortholog_one2one 2 retrogenes
retro_dnov_2303, retro_dnov_2558,
Dipodomys ordii ENSDORG00000012060 ortholog_one2one 6 retrogenes
retro_dord_225, retro_dord_494, retro_dord_641, retro_dord_73, retro_dord_74, retro_dord_767,
Homo sapiens ENSG00000124614 possible_ortholog 24 retrogenes
retro_hsap_1509, retro_hsap_1628, retro_hsap_1630, retro_hsap_1657, retro_hsap_1923, retro_hsap_2003, retro_hsap_2113, retro_hsap_229, retro_hsap_2415, retro_hsap_2573, retro_hsap_2574, retro_hsap_2830, retro_hsap_289, retro_hsap_3007, retro_hsap_3170, retro_hsap_3243, retro_hsap_3436, retro_hsap_3454, retro_hsap_3720, retro_hsap_4114, retro_hsap_4190, retro_hsap_460, retro_hsap_869, retro_hsap_992,
Latimeria chalumnae ENSLACG00000017219 ortholog_one2one 1 retrogene
retro_lcha_26,
Loxodonta africana ENSLAFG00000008539 ortholog_one2one 1 retrogene
retro_lafr_756,
Macaca mulatta ENSMMUG00000000267 possible_ortholog 2 retrogenes
retro_mmul_332, retro_mmul_555,
Monodelphis domestica ENSMODG00000013929 ortholog_one2one 2 retrogenes
retro_mdom_1889, retro_mdom_437,
Mustela putorius furo ENSMPUG00000003117 possible_ortholog 3 retrogenes
retro_mputfur_1347, retro_mputfur_1533, retro_mputfur_1579,
Mus musculus ENSMUSG00000052146 possible_ortholog 9 retrogenes
retro_mmus_1376, retro_mmus_1500, retro_mmus_1831, retro_mmus_2431, retro_mmus_2551, retro_mmus_2708, retro_mmus_3651, retro_mmus_5, retro_mmus_858,
Nomascus leucogenys ENSNLEG00000008336 ortholog_one2one 24 retrogenes
retro_nleu_1064, retro_nleu_1206, retro_nleu_1217, retro_nleu_1366, retro_nleu_1463, retro_nleu_1496, retro_nleu_165, retro_nleu_1694, retro_nleu_1748, retro_nleu_1969, retro_nleu_2120, retro_nleu_2452, retro_nleu_2678, retro_nleu_2791, retro_nleu_2833, retro_nleu_2834, retro_nleu_2950, retro_nleu_2955, retro_nleu_3021, retro_nleu_3047, retro_nleu_3052, retro_nleu_579, retro_nleu_850, retro_nleu_882,
Oryctolagus cuniculus ENSOCUG00000011373 possible_ortholog 2 retrogenes
retro_ocun_250, retro_ocun_874,
Ochotona princeps ENSOPRG00000002693 ortholog_one2one 2 retrogenes
retro_opri_297, retro_opri_800,
Procavia capensis ENSPCAG00000012795 ortholog_one2one 1 retrogene
retro_pcap_309,
Pongo abelii ENSPPYG00000016516 ortholog_one2one 2 retrogenes
retro_pabe_2319, retro_pabe_97,
Rattus norvegicus ENSRNOG00000000490 possible_ortholog 4 retrogenes
retro_rnor_169, retro_rnor_224, retro_rnor_359, retro_rnor_74,
Sarcophilus harrisii ENSSHAG00000000731 ortholog_one2one 3 retrogenes
retro_shar_243, retro_shar_334, retro_shar_724,
Tupaia belangeri ENSTBEG00000001492 ortholog_one2one 16 retrogenes
retro_tbel_1302, retro_tbel_175, retro_tbel_1775, retro_tbel_2039, retro_tbel_2061, retro_tbel_2062, retro_tbel_2766, retro_tbel_2814, retro_tbel_314, retro_tbel_3359, retro_tbel_483, retro_tbel_522, retro_tbel_667, retro_tbel_980, retro_tbel_981, retro_tbel_986,
Tursiops truncatus ENSTTRG00000015064 ortholog_one2one 2 retrogenes
retro_ttru_1089, retro_ttru_1211,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_199 88.31 88.37
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2. retro_ptro_238 79.61 59.30
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3. retro_ptro_347 77.78 88.37
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4. retro_ptro_603 97.37 88.37
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5. retro_ptro_1021 89.47 88.37
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6. retro_ptro_1090 85.71 52.33
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7. retro_ptro_1092 83.52 52.33
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8. retro_ptro_1126 81.32 52.33
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9. retro_ptro_1160 77.48 64.53
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10. retro_ptro_1287 87.58 88.37
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11. retro_ptro_1335 90.71 81.40
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12. retro_ptro_1391 71.56 63.37
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13. retro_ptro_1497 78.40 72.67
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14. retro_ptro_1502 90.43 66.28
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15. retro_ptro_1503 93.00 57.56
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16. retro_ptro_1788 86.99 71.51
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17. retro_ptro_1918 86.62 88.37
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18. retro_ptro_2192 87.50 88.37
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19. retro_ptro_2330 88.16 88.37
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20. retro_ptro_2342 92.11 88.37
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21. retro_ptro_2519 86.84 87.79
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22. retro_ptro_2793 90.85 81.98
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23. retro_ptro_2797 97.79 79.07
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24. retro_ptro_2919 90.48 85.47
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25. retro_ptro_3051 84.62 52.33
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26. retro_ptro_3078 84.62 52.33
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Download FASTA sequences of all ENSPTRG00000018063 retrocopies