Parental gene:

MYL6B, ENSPTRG00000023043

Aliases:None
Description:myosin, light chain 6B, alkali, smooth muscle and non-muscle [Source:HGNC Symbol;Acc:29823]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:33206058..33211640(-)


>ENSPTRG00000023043
ATGCCTCCCAAGAAGGATGTTCCCGTGAAGAAACCAGCAGGGCCCTCCATCTCCAAACCTGCTGCTAAGCCAGCAGCAGC
AGGGGCTCCTCCAGCCAAGACCAAAGCTGAGCCAGCTGTCCCCCAGGCCCCTCAGAAAACCCAGGAGCCTCCAGTCGATC
TCTCCAAAGTGGTGATCGAGTTTAACAAGGACCAGCTGGAGGAGTTCAAGGAGGCCTTTGAGCTGTTTGACCGAGTGGGG
GATGGCAAGATCCTGTACAGCCAGTGTGGGGACGTGATGAGGGCCCTGGGCCAGAACCCCACCAACGCCGAGGTGCTCAA
GGTCCTGGGGAACCCCAAGAGTGATGAGCTGAAGTCCCGGCGTGTGGACTTTGAGACTTTCCTGCCCATGCTCCAGGCAG
TGGCCAAGAACCGAGGCCAAGGCACATATGAGGACTACTTGGAGGGGCTTCGTGTGTTTGACAAGGAGGGGAACGGCAAA
GTCATGGGAGCAGAGCTCAGACATGTTCTCACCACCCTTGGAGAGAAGATGACTGAGGAGGAGGTGGAGACCGTTCTGGC
AGGACACGAGGACAGCAACGGCTGCATCAACTACGAGGCCTTCTTGAAACACATCCTAAGCGTCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 73 .86 RPM
SRP007412_cerebellum 48 .61 RPM
SRP007412_heart 13 .93 RPM
SRP007412_kidney 20 .79 RPM
SRP007412_liver 4 .39 RPM
SRP007412_testis 34 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000110 ortholog_one2one 1 retrogene
retro_cfam_1894,
Callithrix jacchus ENSCJAG00000011620 ortholog_one2one 3 retrogenes
retro_cjac_113, retro_cjac_2566, retro_cjac_2848,
Dasypus novemcinctus ENSDNOG00000007592 ortholog_one2one 1 retrogene
retro_dnov_2073,
Homo sapiens ENSG00000196465 ortholog_one2one 1 retrogene
retro_hsap_2383,
Gorilla gorilla ENSGGOG00000003277 ortholog_one2one 2 retrogenes
retro_ggor_1808, retro_ggor_2233,
Loxodonta africana ENSLAFG00000012658 ortholog_one2one 1 retrogene
retro_lafr_734,
Macaca mulatta ENSMMUG00000005214 ortholog_one2one 1 retrogene
retro_mmul_962,
Nomascus leucogenys ENSNLEG00000026948 ortholog_one2one 1 retrogene
retro_nleu_369,
Oryctolagus cuniculus ENSOCUG00000017368 ortholog_one2one 1 retrogene
retro_ocun_374,
Otolemur garnettii ENSOGAG00000001521 ortholog_one2many 3 retrogenes
retro_ogar_1918, retro_ogar_3179, retro_ogar_680,
Procavia capensis ENSPCAG00000005927 ortholog_one2one 2 retrogenes
retro_pcap_223, retro_pcap_242,
Pongo abelii ENSPPYG00000004646 ortholog_one2one 1 retrogene
retro_pabe_2150,
Pan troglodytes ENSPTRG00000005080 within_species_paralog 2 retrogenes
retro_ptro_1196, retro_ptro_1476,
Rattus norvegicus ENSRNOG00000028837 ortholog_one2many 2 retrogenes
retro_rnor_1432, retro_rnor_216,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1741 76.92 81.25
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2. retro_ptro_2579 67.59 68.27
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Download FASTA sequences of all ENSPTRG00000023043 retrocopies