Parental gene:

Skp1, ENSRNOG00000005828

Aliases:Skp1, Skp1a
Description:S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6PEC4]
Organism:Rat (Rattus norvegicus)
Coordinates:10:37373098..37383454(+)


>ENSRNOG00000005828
ATGCCTACGATAAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTAGAAATTGCCAAACAATCTGTGACCAT
TAAGACCATGCTGGAAGATTTGGGAATGGATGATGAGGGAGATGATGATCCTGTTCCTTTACCAAATGTTAATGCAGCAA
TTCTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAGGATGACCCTCCTCCTCCTGAGGATGATGAGAACAAAGAGAAG
CGGACAGATGATATTCCTGTTTGGGACCAAGAATTCCTGAAAGTTGACCAAGGAACACTTTTTGAACTTATTCTGGCTGC
AAACTACTTAGACATCAAAGGTTTGCTTGATGTCACCTGCAAGACTGTGGCTAATATGATTAAGGGGAAAACGCCTGAGG
AGATTCGTAAAACCTTCAATATCAAAAATGACTTTACTGAAGAGGAGGAGGCCCAGGTACGCAAAGAGAACCAGTGGTGT
GAAGAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 277 .95 RPM
SRP017611_kidney 493 .22 RPM
SRP017611_liver 143 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000025191 ortholog_one2one 5 retrogenes
retro_btau_10, retro_btau_1062, retro_btau_1253, retro_btau_1444, retro_btau_1687,
Canis familiaris ENSCAFG00000000994 ortholog_one2one 5 retrogenes
retro_cfam_1613, retro_cfam_779, retro_cfam_813, retro_cfam_889, retro_cfam_965,
Callithrix jacchus ENSCJAG00000013613 possible_ortholog 1 retrogene
retro_cjac_112,
Echinops telfairi ENSETEG00000007560 possible_ortholog 5 retrogenes
retro_etel_1730, retro_etel_515, retro_etel_758, retro_etel_762, retro_etel_811,
Homo sapiens ENSG00000113558 ortholog_one2one 10 retrogenes
retro_hsap_2193, retro_hsap_2596, retro_hsap_3321, retro_hsap_3346, retro_hsap_3863, retro_hsap_4161, retro_hsap_4163, retro_hsap_4164, retro_hsap_724, retro_hsap_972,
Gorilla gorilla ENSGGOG00000022930 ortholog_one2one 7 retrogenes
retro_ggor_1288, retro_ggor_1300, retro_ggor_2601, retro_ggor_2602, retro_ggor_2796, retro_ggor_2797, retro_ggor_778,
Loxodonta africana ENSLAFG00000016832 ortholog_one2one 1 retrogene
retro_lafr_83,
Microcebus murinus ENSMICG00000017588 possible_ortholog 3 retrogenes
retro_mmur_270, retro_mmur_803, retro_mmur_997,
Myotis lucifugus ENSMLUG00000022919 possible_ortholog 13 retrogenes
retro_mluc_1455, retro_mluc_1738, retro_mluc_1895, retro_mluc_2009, retro_mluc_2260, retro_mluc_2261, retro_mluc_2520, retro_mluc_2527, retro_mluc_2557, retro_mluc_267, retro_mluc_383, retro_mluc_841, retro_mluc_944,
Monodelphis domestica ENSMODG00000014168 possible_ortholog 4 retrogenes
retro_mdom_1173, retro_mdom_155, retro_mdom_1648, retro_mdom_929,
Otolemur garnettii ENSOGAG00000028707 ortholog_one2one 8 retrogenes
retro_ogar_1446, retro_ogar_1510, retro_ogar_1511, retro_ogar_1890, retro_ogar_2019, retro_ogar_2728, retro_ogar_3306, retro_ogar_581,
Pongo abelii ENSPPYG00000015783 possible_ortholog 7 retrogenes
retro_pabe_1915, retro_pabe_199, retro_pabe_2072, retro_pabe_2736, retro_pabe_2756, retro_pabe_626, retro_pabe_824,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1391 75.45 100.00
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2. retro_rnor_1392 75.45 100.00
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3. retro_rnor_1465 80.00 66.26
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4. retro_rnor_1888 57.35 81.60
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5. retro_rnor_2166 86.05 78.53
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6. retro_rnor_2333 80.12 100.00
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Download FASTA sequences of all ENSRNOG00000005828 retrocopies