RetrogeneDB ID: | retro_cfam_965 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 20:41386619..41387107(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000004560 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP1 | ||
Ensembl ID: | ENSCAFG00000000994 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris S-phase kinase-associated protein 1 (SKP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252408] |
Percent Identity: | 95.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPSIKLPSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPP |
MPSIKL.SSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT.HKDDPP | |
Retrocopy | MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTRHKDDPP |
Parental | PPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI-RKTF |
.PED.ENKEK.TDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI.RKTF | |
Retrocopy | SPEDNENKEKWTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI<RKTF |
Parental | NIKNDFTEEEEAQVRKENQWCEEK |
NIKN.FTEEEEAQV.KENQWCEEK | |
Retrocopy | NIKNYFTEEEEAQVPKENQWCEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 14 .49 RPM | 161 .15 RPM |
SRP017611_brain | 16 .20 RPM | 167 .36 RPM |
SRP017611_kidney | 18 .03 RPM | 222 .22 RPM |
SRP017611_liver | 3 .48 RPM | 38 .79 RPM |