Parental gene:

SKP1, ENSPPYG00000015783

Aliases:SKP1, SKP1A
Description:S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5R512]
Organism:Orangutan (Pongo abelii)
Coordinates:5:135601589..135625279(-)


>ENSPPYG00000015783
ATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTGGAAATTGCCAAACAATCTGTGACTAT
TAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGACCCAGTTCCTCTACCAAATGTGAATGCAGCAA
TATTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAGGATGACCCTCCTCCTCCTGAAGATGATGAGAACAAAGAAAAG
CGAACAGACGATATTCCTGTTTGGGACCAAGAATTCCTGAAAGTTGACCAAGGAACACTTTTTGAACTCATTCTGGCTGC
AAACTACTTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGG
AGATTCGCAAGACCTTCAATATCAAAAATGACTTTACTGAAGAGGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGT
GAAGAGAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 147 .74 RPM
SRP007412_cerebellum 227 .27 RPM
SRP007412_heart 97 .29 RPM
SRP007412_kidney 96 .82 RPM
SRP007412_liver 55 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017810 possible_ortholog 1 retrogene
retro_amel_897,
Bos taurus ENSBTAG00000025191 possible_ortholog 5 retrogenes
retro_btau_10, retro_btau_1062, retro_btau_1253, retro_btau_1444, retro_btau_1687,
Canis familiaris ENSCAFG00000000994 ortholog_one2many 5 retrogenes
retro_cfam_1613, retro_cfam_779, retro_cfam_813, retro_cfam_889, retro_cfam_965,
Callithrix jacchus ENSCJAG00000013613 ortholog_one2one 1 retrogene
retro_cjac_112,
Cavia porcellus ENSCPOG00000005164 ortholog_one2one 8 retrogenes
retro_cpor_1038, retro_cpor_1133, retro_cpor_1345, retro_cpor_1446, retro_cpor_223, retro_cpor_243, retro_cpor_830, retro_cpor_832,
Dasypus novemcinctus ENSDNOG00000012999 possible_ortholog 9 retrogenes
retro_dnov_1216, retro_dnov_1338, retro_dnov_2433, retro_dnov_2526, retro_dnov_2647, retro_dnov_281, retro_dnov_286, retro_dnov_389, retro_dnov_776,
Dipodomys ordii ENSDORG00000002912 ortholog_one2one 3 retrogenes
retro_dord_338, retro_dord_512, retro_dord_720,
Equus caballus ENSECAG00000003931 ortholog_one2one 2 retrogenes
retro_ecab_466, retro_ecab_789,
Echinops telfairi ENSETEG00000007560 ortholog_one2one 5 retrogenes
retro_etel_1730, retro_etel_515, retro_etel_758, retro_etel_762, retro_etel_811,
Felis catus ENSFCAG00000031140 possible_ortholog 1 retrogene
retro_fcat_653,
Homo sapiens ENSG00000113558 possible_ortholog 10 retrogenes
retro_hsap_2193, retro_hsap_2596, retro_hsap_3321, retro_hsap_3346, retro_hsap_3863, retro_hsap_4161, retro_hsap_4163, retro_hsap_4164, retro_hsap_724, retro_hsap_972,
Gorilla gorilla ENSGGOG00000022930 possible_ortholog 7 retrogenes
retro_ggor_1288, retro_ggor_1300, retro_ggor_2601, retro_ggor_2602, retro_ggor_2796, retro_ggor_2797, retro_ggor_778,
Latimeria chalumnae ENSLACG00000016599 possible_ortholog 1 retrogene
retro_lcha_103,
Loxodonta africana ENSLAFG00000016832 possible_ortholog 1 retrogene
retro_lafr_83,
Microcebus murinus ENSMICG00000017588 possible_ortholog 3 retrogenes
retro_mmur_270, retro_mmur_803, retro_mmur_997,
Myotis lucifugus ENSMLUG00000022919 possible_ortholog 13 retrogenes
retro_mluc_1455, retro_mluc_1738, retro_mluc_1895, retro_mluc_2009, retro_mluc_2260, retro_mluc_2261, retro_mluc_2520, retro_mluc_2527, retro_mluc_2557, retro_mluc_267, retro_mluc_383, retro_mluc_841, retro_mluc_944,
Macaca mulatta ENSMMUG00000013046 ortholog_one2one 7 retrogenes
retro_mmul_1171, retro_mmul_2082, retro_mmul_2091, retro_mmul_2508, retro_mmul_654, retro_mmul_795, retro_mmul_919,
Monodelphis domestica ENSMODG00000014168 ortholog_one2one 4 retrogenes
retro_mdom_1173, retro_mdom_155, retro_mdom_1648, retro_mdom_929,
Mus musculus ENSMUSG00000036309 ortholog_one2one 1 retrogene
retro_mmus_2518,
Nomascus leucogenys ENSNLEG00000008051 ortholog_one2one 7 retrogenes
retro_nleu_1171, retro_nleu_1615, retro_nleu_1667, retro_nleu_2290, retro_nleu_323, retro_nleu_472, retro_nleu_827,
Oryctolagus cuniculus ENSOCUG00000022505 possible_ortholog 10 retrogenes
retro_ocun_1119, retro_ocun_1228, retro_ocun_1242, retro_ocun_1420, retro_ocun_1453, retro_ocun_1572, retro_ocun_1784, retro_ocun_397, retro_ocun_448, retro_ocun_553,
Otolemur garnettii ENSOGAG00000028707 possible_ortholog 8 retrogenes
retro_ogar_1446, retro_ogar_1510, retro_ogar_1511, retro_ogar_1890, retro_ogar_2019, retro_ogar_2728, retro_ogar_3306, retro_ogar_581,
Ochotona princeps ENSOPRG00000006637 ortholog_one2one 7 retrogenes
retro_opri_1199, retro_opri_188, retro_opri_23, retro_opri_513, retro_opri_547, retro_opri_902, retro_opri_955,
Pteropus vampyrus ENSPVAG00000012427 ortholog_one2one 4 retrogenes
retro_pvam_1040, retro_pvam_1137, retro_pvam_1269, retro_pvam_503,
Rattus norvegicus ENSRNOG00000005828 possible_ortholog 6 retrogenes
retro_rnor_1391, retro_rnor_1392, retro_rnor_1465, retro_rnor_1888, retro_rnor_2166, retro_rnor_2333,
Sorex araneus ENSSARG00000008307 ortholog_one2one 4 retrogenes
retro_sara_241, retro_sara_446, retro_sara_492, retro_sara_609,
Tupaia belangeri ENSTBEG00000015544 ortholog_one2one 15 retrogenes
retro_tbel_1227, retro_tbel_1279, retro_tbel_1327, retro_tbel_1758, retro_tbel_1787, retro_tbel_1903, retro_tbel_1905, retro_tbel_240, retro_tbel_3024, retro_tbel_3267, retro_tbel_3848, retro_tbel_405, retro_tbel_4095, retro_tbel_528, retro_tbel_711,
Tarsius syrichta ENSTSYG00000010696 ortholog_one2one 11 retrogenes
retro_tsyr_1037, retro_tsyr_1370, retro_tsyr_1400, retro_tsyr_1896, retro_tsyr_1924, retro_tsyr_2058, retro_tsyr_210, retro_tsyr_336, retro_tsyr_396, retro_tsyr_464, retro_tsyr_762,
Tursiops truncatus ENSTTRG00000016858 ortholog_one2one 6 retrogenes
retro_ttru_1344, retro_ttru_1764, retro_ttru_1801, retro_ttru_656, retro_ttru_657, retro_ttru_961,
Vicugna pacos ENSVPAG00000001583 possible_ortholog 1 retrogene
retro_vpac_279,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_199 93.25 100.00
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2. retro_pabe_626 79.00 61.35
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3. retro_pabe_824 86.99 89.57
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4. retro_pabe_1915 63.46 61.35
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5. retro_pabe_2072 67.00 60.12
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6. retro_pabe_2736 68.60 71.17
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7. retro_pabe_2756 69.86 86.50
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Download FASTA sequences of all ENSPPYG00000015783 retrocopies