Parental gene:

GNPNAT1, ENSSSCG00000005040

Aliases:None
Description:glucosamine-phosphate N-acetyltransferase 1 [Source:HGNC Symbol;Acc:19980]
Organism:Pig (Sus scrofa)
Coordinates:1:202680391..202693992(-)


>ENSSSCG00000005040
ATGAAACCTGATGAAACTCCTCTCTTTGACCCAAGTCTACTCAAAGAAGTGGACTGGAGTCAGAATACAGCTACATTTTC
TCCAGCCATTTCCCCAACACATCCTGGAGAAGGTTTGGTTTTGAGGCCTCTTTGTACTGCTGATTTAAATAGAGGTTTTT
TTAAGGTACTAGGTCAGCTGACAGAGACTGGAGTTGTTAACCCGGAACAATTTATGAAATCTTTTGAGCACATGAAGAAA
TCTGGGGACTATTATGTTACTGTTGTAGAAGATGTGACTTTAGGACAGATAGTTGCTACAGCAACTCTGATAATAGAACA
TAAATTCATCCATTCTTGTGCTAAGAGAGGAAGAGTAGAAGATGTTGTTGTTAGTGATGAATGCAGAGGAAAGCAGCTTG
GCAAATTGTTATTATCAACCCTTACTTTGCTAAGCAAGAAACTGAACTGTTATAAGATTACCCTTGAATGTCTACCACAA
AATGTTGGCTTCTACAAAAAGTTTGGATATACAGTATCTGAAGAAAACTACATGTGTAGGAGGTTTCTAAAGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 3 .45 RPM
SRP014902_testis 16 .83 RPM
SRP018288_heart 11 .16 RPM
SRP018288_kidney 23 .44 RPM
SRP018288_liver 72 .44 RPM
SRP018288_lung 10 .69 RPM
SRP018856_adipose 19 .06 RPM
SRP035408_brain 6 .86 RPM
SRP035408_liver 52 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003459 ortholog_one2one 1 retrogene
retro_chof_2153,
Callithrix jacchus ENSCJAG00000007154 ortholog_one2one 3 retrogenes
retro_cjac_1479, retro_cjac_1510, retro_cjac_2749,
Dasypus novemcinctus ENSDNOG00000018802 ortholog_one2one 2 retrogenes
retro_dnov_1564, retro_dnov_548,
Dipodomys ordii ENSDORG00000016414 ortholog_one2one 1 retrogene
retro_dord_393,
Homo sapiens ENSG00000100522 ortholog_one2one 3 retrogenes
retro_hsap_2191, retro_hsap_4085, retro_hsap_4116,
Gorilla gorilla ENSGGOG00000025060 ortholog_one2many 2 retrogenes
retro_ggor_2740, retro_ggor_2762,
Macropus eugenii ENSMEUG00000003086 ortholog_one2one 1 retrogene
retro_meug_930,
Microcebus murinus ENSMICG00000014347 ortholog_one2one 1 retrogene
retro_mmur_528,
Macaca mulatta ENSMMUG00000011571 ortholog_one2one 2 retrogenes
retro_mmul_2355, retro_mmul_2371,
Monodelphis domestica ENSMODG00000014505 ortholog_one2one 1 retrogene
retro_mdom_1609,
Mus musculus ENSMUSG00000037722 ortholog_one2one 1 retrogene
retro_mmus_1799,
Nomascus leucogenys ENSNLEG00000012510 ortholog_one2one 2 retrogenes
retro_nleu_321, retro_nleu_583,
Oryctolagus cuniculus ENSOCUG00000007858 ortholog_one2many 1 retrogene
retro_ocun_194,
Otolemur garnettii ENSOGAG00000010015 ortholog_one2one 1 retrogene
retro_ogar_1704,
Ochotona princeps ENSOPRG00000016136 ortholog_one2one 9 retrogenes
retro_opri_1142, retro_opri_1221, retro_opri_278, retro_opri_312, retro_opri_544, retro_opri_634, retro_opri_831, retro_opri_940, retro_opri_962,
Pongo abelii ENSPPYG00000005822 ortholog_one2one 1 retrogene
retro_pabe_2069,
Pan troglodytes ENSPTRG00000006354 ortholog_one2one 3 retrogenes
retro_ptro_1667, retro_ptro_2770, retro_ptro_2795,
Rattus norvegicus ENSRNOG00000008641 ortholog_one2one 1 retrogene
retro_rnor_2051,
Sarcophilus harrisii ENSSHAG00000005482 ortholog_one2one 1 retrogene
retro_shar_379,
Tupaia belangeri ENSTBEG00000005538 ortholog_one2one 2 retrogenes
retro_tbel_4657, retro_tbel_593,
Tursiops truncatus ENSTTRG00000003898 ortholog_one2one 1 retrogene
retro_ttru_655,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_480 82.16 100.00
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Download FASTA sequences of all ENSSSCG00000005040 retrocopies