RetrogeneDB ID: | retro_dnov_548 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | GeneScaffold_6029:26334..26622(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GNPNAT1 | ||
| Ensembl ID: | ENSDNOG00000018802 | ||
| Aliases: | None | ||
| Description: | glucosamine-phosphate N-acetyltransferase 1 [Source:HGNC Symbol;Acc:19980] |
Retrocopy-Parental alignment summary:
>retro_dnov_548
CAGATTGGAGTTGTCACCCTCGAGCAATTCATGAAATCTTTTGAGCATATGAAGTATTCTGAGGATTATTATGTTACAGT
TGTGGAAGATGTTGACTCTATGACAGAATGTTGCTATAGCAACTCTGATAATTAAACATAAATTCATCCATTCCTGTGCT
AACAGAGGAAGAGTAGAAGATGTTAGTGATGAATGTGAGGGAAGCAGCTTGCCAGTTGTTATTATCAACCCTTACTTTGA
ATAAGCAAGAAACTGGACTGTTATAAGATTACCGCTGAAAATCTACCA
ORF - retro_dnov_548 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 67.0 % |
| Parental protein coverage: | 53.26 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | ETGVVNPEQFMQSFEHMKKSGNFYVTVVEDV-TLGQIVAIATLIIEHKFIHSCTKRGRVEDIVVSDECR- |
| ..GVV..EQFM.SFEHMK.S...YVTVVEDV.TL.Q.VAIATLII.HKFIHSC..RGRVED..VSDEC.. | |
| Retrocopy | QIGVVTLEQFMKSFEHMKYSEDYYVTVVEDV>TL*QNVAIATLIIKHKFIHSCANRGRVED--VSDECE< |
| Parental | GKQTGKLLLSTLTLLSKKLNCYKITLECLP |
| GKQ........L...SKKL.CYKIT.E.LP | |
| Retrocopy | GKQLASCYYQPLL*ISKKLDCYKITAENLP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 6 .42 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 6 .74 RPM |
| SRP012922_heart | 0 .00 RPM | 0 .70 RPM |
| SRP012922_kidney | 0 .00 RPM | 3 .83 RPM |
| SRP012922_liver | 0 .00 RPM | 2 .79 RPM |
| SRP012922_lung | 0 .00 RPM | 4 .89 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 1 .38 RPM |
| SRP012922_spleen | 0 .00 RPM | 1 .03 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_548 was not experimentally validated.