RetrogeneDB ID: | retro_dnov_1564 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_235657:1102..1441(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNPNAT1 | ||
Ensembl ID: | ENSDNOG00000018802 | ||
Aliases: | None | ||
Description: | glucosamine-phosphate N-acetyltransferase 1 [Source:HGNC Symbol;Acc:19980] |
Percent Identity: | 93.81 % |
Parental protein coverage: | 61.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQSFEHMKKSGNFYVTVVEDVTLGQIVAIATLIIEHKFIHSCTKRGRVEDIVVSDECRGKQTGKLLLSTL |
MQSFEHMKKSG..YVTVVEDVTLGQIVA.ATLIIEHKFIHSC.KRGRVED.VVSDECRGKQ.GKLLLSTL | |
Retrocopy | MQSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLSTL |
Parental | TLLSKKLNCYKITLECLPQNIGFYKKLGYTVSEENYMCRRFLK |
TLLSKKLNCYKITLECLPQNIGFYKK.GYTVSEENYMCRRFLK | |
Retrocopy | TLLSKKLNCYKITLECLPQNIGFYKKFGYTVSEENYMCRRFLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 11 .08 RPM | 6 .42 RPM |
SRP012922_cerebellum | 7 .42 RPM | 6 .74 RPM |
SRP012922_heart | 1 .62 RPM | 0 .70 RPM |
SRP012922_kidney | 5 .75 RPM | 3 .83 RPM |
SRP012922_liver | 6 .50 RPM | 2 .79 RPM |
SRP012922_lung | 6 .72 RPM | 4 .89 RPM |
SRP012922_quadricep_muscle | 2 .42 RPM | 1 .38 RPM |
SRP012922_spleen | 2 .98 RPM | 1 .03 RPM |