Parental gene:

RPL34, ENSSSCG00000009146

Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]
Organism:Pig (Sus scrofa)
Coordinates:8:121707344..121711622(-)


>ENSSSCG00000009146
ATGGTCCAGCGATTGACGTACCGTCGTAGGCTATCCTACAACACAGCCTCTAACAAAACCAGGCTGTCCCGAACCCCTGG
TAATAGAATCGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGCGTGTGCCCAGGCCGACTTC
GAGGAGTCCGTGCTGTGAGACCTAAAGTTCTCATGAGATTGTCTAAAACGAAAAAACATGTCAGCCGGGCCTATGGTGGT
TCCATGTGTGCTAAATGTGTCCGTGACAGGATCAAGCGTGCTTTTCTTATCGAGGAGCAGAAAATTGTTGTGAAAGTGTT
GAAAGCACAAGCACAGAGTCAGAAAGCTAAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 100 .88 RPM
SRP014902_testis 599 .73 RPM
SRP018288_heart 233 .25 RPM
SRP018288_kidney 294 .53 RPM
SRP018288_liver 280 .48 RPM
SRP018288_lung 321 .06 RPM
SRP018856_adipose 673 .61 RPM
SRP035408_brain 263 .77 RPM
SRP035408_liver 204 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2one 26 retrogenes
retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Equus caballus ENSECAG00000019719 ortholog_one2one 1 retrogene
retro_ecab_58,
Gadus morhua ENSGMOG00000009982 ortholog_one2one 1 retrogene
retro_gmor_31,
Loxodonta africana ENSLAFG00000032615 ortholog_one2one 6 retrogenes
retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii ENSMEUG00000009361 ortholog_one2one 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Myotis lucifugus ENSMLUG00000000464 possible_ortholog 4 retrogenes
retro_mluc_125, retro_mluc_1372, retro_mluc_1427, retro_mluc_1847,
Monodelphis domestica ENSMODG00000020601 ortholog_one2one 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2one 1 retrogene
retro_psin_60,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_one2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_one2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2one 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Tursiops truncatus ENSTTRG00000003443 ortholog_one2one 6 retrogenes
retro_ttru_1667, retro_ttru_1831, retro_ttru_355, retro_ttru_710, retro_ttru_717, retro_ttru_821,
Xenopus tropicalis ENSXETG00000021095 ortholog_one2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_522 83.91 74.36
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2. retro_sscr_697 70.69 97.44
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3. retro_sscr_703 60.61 83.76
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4. retro_sscr_845 65.71 59.83
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5. retro_sscr_929 56.58 63.25
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6. retro_sscr_1013 53.40 87.18
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7. retro_sscr_1014 65.52 74.36
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8. retro_sscr_1024 81.43 58.12
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Download FASTA sequences of all ENSSSCG00000009146 retrocopies