Parental gene:

DNAJA1, ENSSSCG00000011000

Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229]
Organism:Pig (Sus scrofa)
Coordinates:10:37686861..37699607(-)


>ENSSSCG00000011000
ATGGTGAAAGAAACCACTTACTATGATGTTTTGGGGGTCAAACCCAATGCCACCCAAGAAGAATTGAAAAAGGCTTACAG
GAAACTGGCCTTGAAGTACCACCCTGATAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTACGAAG
TGCTCTCTGATGCAAAGAAAAGGGAATTATATGATAAAGGAGGAGAACAGGCAATTAAAGAAGGTGGAGCAGGTGGTGGT
TTTGGCTCCCCCATGGATATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAAAATGT
TGTGCATCAACTCTCAGTAACTTTAGAAGATTTATATAATGGTGCAACAAGAAAACTAGCTCTGCAGAAGAATGTGATTT
GTGACAAATGTGAAGGCCGAGGTGGTAAGAAAGGAGCAGTAGAATGCTGTCCCAATTGCCGAGGTACTGGAATGCAAATA
AGAATTCATCAAATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTGTGCATGGAGTGCCAGGGCCATGGGGAGCGGAT
CAGTCCTAAAGATAGATGTAAAAGTTGCAATGGGAGGAAGATAGTTCGAGAAAAGAAAATTCTAGAAGTTCATATTGACA
AAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAGGGAGACCAAGAACCAGGACTGGAGCCAGGAGACATTATC
ATTGTTTTAGATCAGAAGGACCATGCCGTTTTTACTCGACGAGGAGAAGACCTTTTTATGTGTATGGACATACAGCTGGT
TGAGGCATTGTGTGGCTTCCAAAAGCCGATATCTACTCTTGACAACCGAACCATAGTCATCACTTCTCATCCAGGTCAGA
TTGTCAAGCATGGAGATATCAAGTGTGTGCTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAAAAGGGTCGCCTA
ATTATTGAATTTAAGGTGAACTTTCCTGAGAATGGTTTTCTCTCCCCTGATAAACTCTCTTTGCTGGAAAAACTCCTACC
TGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGACCAGGTAGAACTAGTGGACTTTGATCCAAATCAGGAGAGACGAC
GCCATTACAATGGAGAAGCATATGAGGATGATGAACATCATCCTCGGGGTGGTGTTCAGTGTCAGACCTCTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 39 .02 RPM
SRP014902_testis 277 .66 RPM
SRP018856_adipose 183 .71 RPM
SRP018288_kidney 262 .62 RPM
SRP018288_lung 178 .91 RPM
SRP018288_liver 300 .31 RPM
SRP018288_heart 136 .97 RPM
SRP035408_liver 143 .08 RPM
SRP035408_brain 524 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007589 possible_ortholog 4 retrogenes
retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Canis familiaris ENSCAFG00000001818 possible_ortholog 23 retrogenes
retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Felis catus ENSFCAG00000008729 ortholog_one2one 5 retrogenes
retro_fcat_1241, retro_fcat_1407, retro_fcat_1502, retro_fcat_1984, retro_fcat_811,
Gorilla gorilla ENSGGOG00000007030 possible_ortholog 3 retrogenes
retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Macaca mulatta ENSMMUG00000007740 ortholog_one2one 6 retrogenes
retro_mmul_1313, retro_mmul_1802, retro_mmul_2477, retro_mmul_2482, retro_mmul_2625, retro_mmul_400,
Monodelphis domestica ENSMODG00000003384 ortholog_one2one 7 retrogenes
retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Nomascus leucogenys ENSNLEG00000005268 ortholog_one2one 4 retrogenes
retro_nleu_1255, retro_nleu_2550, retro_nleu_2793, retro_nleu_509,
Oryctolagus cuniculus ENSOCUG00000004833 ortholog_one2one 2 retrogenes
retro_ocun_516, retro_ocun_70,
Sarcophilus harrisii ENSSHAG00000012366 ortholog_one2one 1 retrogene
retro_shar_762,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_134 88.40 80.10
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2. retro_sscr_984 68.24 57.43
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Download FASTA sequences of all ENSSSCG00000011000 retrocopies