Parental gene:

ENSOCUG00000004833

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:1:20384825..20394454(-)


>ENSOCUG00000004833
ATGGTGAAAGAAACCACTTACTATGATGTTTTGGGGGTCAAACCCAATGCCACCCAGGAAGAACTGAAAAAGGCTTACAG
GAAATTGGCCTTAAAGTACCACCCTGATAAGAATCCAAATGAAGGAGAGAAGTTCAAACAGATTTCTCAAGCTTATGAAG
TTCTTTCTGATGCAAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAAGCAATTAAGGAGGGCGGAGCAGGCGGTGGT
TTTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAGAGAACGGAGAGGTAAAAATGT
GGTTCATCAACTCTCAGTAACCTTAGAAGATTTATATAATGGTGCAACAAGGAAACTAGCTCTACAGAAGAATGTGATTT
GTGACAAATGTGAAGGCCGAGGCGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAATTGCCGAGGTACTGGAATGCAAATA
AGGATTCATCAGATAGGACCTGGAATGGTTCAGCAGATTCAATCTGTATGCATGGAGTGCCAGGGCCATGGGGAACGCAT
CAGTCCTAAAGATAGATGTAAAAGCTGCAATGGAAGGAAAATAGTTCGAGAGAAGAAAATTCTAGAAGTTCATATTGACA
AAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCAGGACTGGAGCCAGGAGATATTATC
ATTGTGTTAGATCAGAAGGACCATGCTGTTTTTACCCGACGAGGAGAAGACCTTTTTATGTGTATGGACATACAATTGGT
CGAAGCATTATGTGGTTTCCAAAAGCCAATATCCACTCTTGACAACCGAACCATAGTCATCACCTCTCATCCAGGTCAGA
TTGTCAAGCATGGAGATATCAAGTGTGTGCTAAATGAAGGCATGCCAATTTATCGTAGACCTTATGAAAAGGGTCGCCTA
ATCATTGAATTCAAGGTAAACTTCCCTGAAAATGGCTTTCTCTCTCCCGATAAACTCTCTTTGCTGGAAAAACTTCTCCC
TGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGATCAGGTAGAACTCGTGGACTTTGATCCAAATCAGGAAAGACGGC
GCCATTATAATGGAGAAGCATACGAGGATGATGAACATCATCCCAGAGGGGGTGTTCAGTGTCAGACCTCCTAA

Library Parental gene expression (RPM)
SRP017611_brain 65 .12 RPM
SRP017611_kidney 31 .62 RPM
SRP017611_liver 30 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007589 possible_ortholog 4 retrogenes
retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Bos taurus ENSBTAG00000016265 possible_ortholog 6 retrogenes
retro_btau_1440, retro_btau_1599, retro_btau_1800, retro_btau_1826, retro_btau_574, retro_btau_828,
Canis familiaris ENSCAFG00000001818 possible_ortholog 23 retrogenes
retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Choloepus hoffmanni ENSCHOG00000000631 possible_ortholog 9 retrogenes
retro_chof_1760, retro_chof_186, retro_chof_2020, retro_chof_2541, retro_chof_2694, retro_chof_287, retro_chof_417, retro_chof_498, retro_chof_946,
Dasypus novemcinctus ENSDNOG00000018342 possible_ortholog 3 retrogenes
retro_dnov_1139, retro_dnov_640, retro_dnov_884,
Felis catus ENSFCAG00000008729 ortholog_one2one 5 retrogenes
retro_fcat_1241, retro_fcat_1407, retro_fcat_1502, retro_fcat_1984, retro_fcat_811,
Homo sapiens ENSG00000086061 possible_ortholog 4 retrogenes
retro_hsap_2331, retro_hsap_2569, retro_hsap_3647, retro_hsap_4889,
Gorilla gorilla ENSGGOG00000007030 possible_ortholog 3 retrogenes
retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Loxodonta africana ENSLAFG00000001527 possible_ortholog 2 retrogenes
retro_lafr_1019, retro_lafr_936,
Macaca mulatta ENSMMUG00000007740 ortholog_one2one 6 retrogenes
retro_mmul_1313, retro_mmul_1802, retro_mmul_2477, retro_mmul_2482, retro_mmul_2625, retro_mmul_400,
Monodelphis domestica ENSMODG00000003384 ortholog_one2many 7 retrogenes
retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Nomascus leucogenys ENSNLEG00000005268 ortholog_one2one 4 retrogenes
retro_nleu_1255, retro_nleu_2550, retro_nleu_2793, retro_nleu_509,
Oryctolagus cuniculus ENSOCUG00000004839 within_species_paralog 1 retrogene
retro_ocun_1126,
Pongo abelii ENSPPYG00000019141 possible_ortholog 4 retrogenes
retro_pabe_1892, retro_pabe_2111, retro_pabe_2559, retro_pabe_2994,
Pan troglodytes ENSPTRG00000020852 possible_ortholog 4 retrogenes
retro_ptro_1499, retro_ptro_1705, retro_ptro_177, retro_ptro_2472,
Sarcophilus harrisii ENSSHAG00000012366 ortholog_one2many 1 retrogene
retro_shar_762,
Sus scrofa ENSSSCG00000011000 ortholog_one2one 2 retrogenes
retro_sscr_134, retro_sscr_984,
Tupaia belangeri ENSTBEG00000000596 possible_ortholog 23 retrogenes
retro_tbel_1281, retro_tbel_134, retro_tbel_1529, retro_tbel_1542, retro_tbel_2260, retro_tbel_2293, retro_tbel_2316, retro_tbel_2428, retro_tbel_2445, retro_tbel_2917, retro_tbel_2965, retro_tbel_2972, retro_tbel_329, retro_tbel_3345, retro_tbel_3353, retro_tbel_3692, retro_tbel_4014, retro_tbel_4223, retro_tbel_432, retro_tbel_591, retro_tbel_617, retro_tbel_634, retro_tbel_842,
Tursiops truncatus ENSTTRG00000007387 possible_ortholog 4 retrogenes
retro_ttru_1181, retro_ttru_1551, retro_ttru_567, retro_ttru_783,
Vicugna pacos ENSVPAG00000001299 possible_ortholog 1 retrogene
retro_vpac_367,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_70 98.49 100.00
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2. retro_ocun_516 99.67 77.08
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Download FASTA sequences of all ENSOCUG00000004833 retrocopies