RetrogeneDB ID: | retro_mmul_2482 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:27113661..27114831(+) | ||
Located in intron of: | ENSMMUG00000001663 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2487 | ||
Ensembl ID: | ENSMMUG00000007740 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.84 % |
Parental protein coverage: | 98.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGG |
YYDVLGVKPNATQ.ELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDK.GE.AIKEGG | |
Retrocopy | YYDVLGVKPNATQKELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKAGELAIKEGG |
Parental | AGGGFGSPMDIFDMFFGGGG-RMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKG |
AGGGFGSPMDIFDM.FG.GG.R...ERRGKNVVH.LSVTLEDL.NGATRKLALQKNVICDKCEGR.GKKG | |
Retrocopy | AGGGFGSPMDIFDMCFG-GG<RKDAERRGKNVVHKLSVTLEDLRNGATRKLALQKNVICDKCEGREGKKG |
Parental | AVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKG |
AVE.CPNCRGT.MQIRIHQIG..MVQQIQSVCMECQ.HGER.S.KDRCKSCNGRKIVREKKILEVHIDKG | |
Retrocopy | AVEGCPNCRGTEMQIRIHQIGL*MVQQIQSVCMECQDHGERSSAKDRCKSCNGRKIVREKKILEVHIDKG |
Parental | MKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTI |
MKDGQKIT.HGEGDQEPGLEPGDIIIVLDQKDHAVF...GEDLFMCMDIQLVEALC.FQK.ISTLDNRTI | |
Retrocopy | MKDGQKITCHGEGDQEPGLEPGDIIIVLDQKDHAVFSE*GEDLFMCMDIQLVEALCDFQKLISTLDNRTI |
Parental | VITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLS-LLEKLLPERKEVEE |
VITSHPG.IVKHGDIKCVLNEGMPIY.RP.EKGRLIIEFKVNFPENGFLSPDKLS..LEKLLPERKEVEE | |
Retrocopy | VITSHPGEIVKHGDIKCVLNEGMPIYHRPDEKGRLIIEFKVNFPENGFLSPDKLS>FLEKLLPERKEVEE |
Parental | TDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
.D.MD.VELVDFDPNQER.R.YNGEAYEDDE.HPRGGVQCQTS | |
Retrocopy | SDGMDEVELVDFDPNQERWRRYNGEAYEDDERHPRGGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 212 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 192 .85 RPM |
SRP007412_cerebellum | 0 .19 RPM | 107 .58 RPM |
SRP007412_heart | 0 .00 RPM | 79 .67 RPM |
SRP007412_kidney | 0 .00 RPM | 94 .25 RPM |
SRP007412_liver | 0 .00 RPM | 82 .02 RPM |
SRP007412_testis | 0 .26 RPM | 424 .47 RPM |