Parental gene:

ENSSSCG00000017352

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:12:18945279..18953571(-)


>ENSSSCG00000017352
ATGGCGGCGCCCAGCGAAGTGGCTGCTGCTGCCTCTGGGGAGAGCGAGGAAGGGGGCAGTGGCTTTGGATCCTGGCTAGA
CGGACGGTTGGAGGCGCTGGGAGTGGACCAAGCCATTTACGGCGCCTACATCCTGGGGGTCCTGCAGGAGGAAGAGGAAG
AAGAGAAGCTGGACGCTCTGCAGGGTATCCTCTCTGCTTTTCTGGAAGAAGATTCCCTCCTGAACATCTGCAAGGAGATT
GTGGAACGATGGTCGGAAACTCAGAATGTTACCACTAAAGTGAAAAAAGAAGATGAGGTCCAGGCCATCGCCACCCTCAT
TGAGAAGCAGGCGCAGATCGTGGTGAAGCCCAGGATGGTGTCAGAAGAGGAGAAGCAGAGGAAAGCCGCACTCCTGGCCC
AGTATGCTGACGTGACAGACGAAGAGCAGTGGGAAGCAGATGAGAAGGATGATTCAGGTGCCTCCACGATGAACCTTGGT
TCTGACAAATCTCTCTTCCGAAACACCAATGTGGAAGACGTTCTCAATGCCCGAAAACTGGAGCGGGACTCGCTTCGGGA
TGAGTCCCAAAGGAAGAAGGAGCAGGACAAGCTGCAGAGGGAGAGGGACAAACTAGCCAAGCAGGAGCGCAAGGAAAAGG
AGAAGAAAAGGACACAAAGAGGGGAGCGAAAGCGATAA

Library Parental gene expression (RPM)
SRP014902_placenta 2 .79 RPM
SRP014902_testis 8 .49 RPM
SRP018288_heart 10 .50 RPM
SRP018288_kidney 11 .33 RPM
SRP018288_liver 4 .80 RPM
SRP018288_lung 11 .10 RPM
SRP018856_adipose 11 .05 RPM
SRP035408_brain 21 .50 RPM
SRP035408_liver 12 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018379 ortholog_one2many 1 retrogene
retro_amel_1479,
Canis familiaris ENSCAFG00000014115 ortholog_one2many 1 retrogene
retro_cfam_456,
Monodelphis domestica ENSMODG00000011411 ortholog_one2many 1 retrogene
retro_mdom_1378,
Mustela putorius furo ENSMPUG00000009224 ortholog_one2many 1 retrogene
retro_mputfur_1511,
Oryctolagus cuniculus ENSOCUG00000017526 ortholog_one2many 1 retrogene
retro_ocun_1500,
Ochotona princeps ENSOPRG00000006793 ortholog_one2many 2 retrogenes
retro_opri_263, retro_opri_699,
Rattus norvegicus ENSRNOG00000002748 ortholog_one2many 1 retrogene
retro_rnor_2906,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_173 90.28 96.00
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2. retro_sscr_944 64.71 59.11
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Download FASTA sequences of all ENSSSCG00000017352 retrocopies