RetrogeneDB ID: retro_mputfur_1511

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897191.1:540776..541311(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCDC43
• Ensembl ID: ENSMPUG00000009224
• Aliases: None
• Description: coiled-coil domain containing 43 [Source:HGNC Symbol;Acc:26472]

Sequence

>retro_mputfur_1511
TTGGTGCAGGAGGAGGAGAAAAGAGAAGTCTGATGCTCTGCAGGGTATCCTCTCTGTCTTCTTGGAAGAAGATTCTCTTC
TTACCCTCTTCAAGGAAATTGTGGAACAATGGTCGTTGGAAAGTTGGAATGTTCTCACCAAGGTGAACAAAGAAGATAAG
ATACAGGCCCTTGCCACCTAAATTTAGAAGCAGGCAGACTGTGGTGAAGCCCAGGATGGTGTCAGAAGGGGAGAAGCAGA
TAAAGCTGCACTTGTAGCCCAGTCAGTATACTGCTGTGACAGATGCAGAAGACGAGAAGGATGAGAAGGATGATTCAGAC
ACCGCCACTAAGAATCTTGGTTCTGATATGTCTTTATTCTGAAACGCCAATGTGGAAGATGTCCTCAATGCTGGAAAACT
GGAGTGAGTGTCACTTTGGGATGAGTCCTGAAGGAAGAAAGAATAGGACAAGCTGCAGATGGAGAGGGACAAACTGGAAA
GCAGGAACGCAAGGAAAGGAAAGAGAAAAGGGCACAATGAGGGGAGTGGAAGCAG

Alignment

ORF - retro_mputfur_1511 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.74 %
• Parental protein coverage: 79.2 %
• Number of stop codons detected: 7
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LQEEEEE-ERLDALQGILSAFLEEDSLLNICKEIVERWS-ESQNVVTKVKKEDEVQAIATLIEKQAQIVV
          L..EEE..E..DALQGILS.FLEEDSLL...KEIVE.WS.ES.NV.TKV.KED..QA.AT.I.KQA....
Retrocopy LVQEEEK>EKSDALQGILSVFLEEDSLLTLFKEIVEQWSLESWNVLTKVNKEDKIQALAT*I*KQADCGE

Parental  KPRMVSEEEKQRKAALL-AQYADVTDEETLTEADEKDDSCASTVNIGSDKSLFRNTNVEDVLNARKLERD
          ....V...E....A.....QY..VT............D........GSD.SLF.N.NVEDVLNA.KLE..
Retrocopy AQDGVRRGEADKAALVA>SQYTAVTXXXXXXXXXXXSDTATKNL--GSDMSLF*NANVEDVLNAGKLE*V

Parental  SLRDESQRKKEQDKLQRERDKL-AKQERKEKEKKRTQRGERKR
          SL.DES.RKKE.DKLQ.ERDKL..KQERKE...KR.Q.GE.K.
Retrocopy SLWDES*RKKE*DKLQMERDKL<GKQERKERKEKRAQ*GEWKQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1511 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1511 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000018379	1 retrocopy	retro_amel_1479,
Canis familiaris	ENSCAFG00000014115	1 retrocopy	retro_cfam_456,
Monodelphis domestica	ENSMODG00000011411	1 retrocopy	retro_mdom_1378,
Mustela putorius furo	ENSMPUG00000009224	1 retrocopy	retro_mputfur_1511 ,
Oryctolagus cuniculus	ENSOCUG00000017526	1 retrocopy	retro_ocun_1500,
Ochotona princeps	ENSOPRG00000006793	2 retrocopies	retro_opri_263, retro_opri_699,
Rattus norvegicus	ENSRNOG00000002748	1 retrocopy	retro_rnor_2906,
Sus scrofa	ENSSSCG00000017352	2 retrocopies	retro_sscr_173, retro_sscr_944,