Parental gene:

FAM50A, ENSSSCG00000025303

Aliases:None
Description:family with sequence similarity 50, member A [Source:HGNC Symbol;Acc:18786]
Organism:Pig (Sus scrofa)
Coordinates:X:143612015..143686129(-)


>ENSSSCG00000025303
ATGGCTCAATACAAGGGTGCCGCGAGCGAGGCGGGCCGCGCCATGCACCTGATGAAAAAGCGAGAGAAACAGCGCGAGCA
GATGGAACAGATGAAGCAGAGGATCGCGGAGGAGAACATAATGAAATCCAACATTGACAAGAAGTTCTCTGCGCACTACG
ATGCTGTGGAGGCGGAGCTCAAGTCCAGCACTGTGGGTCTCGTGACCCTGAATGACATGAAGGCCAAGCAGGAGGCACTG
GTGAAGGAGCGGGAGAAGCAACTGGCCAAGAAGGAGCAGTCGAAGGAGCTGCAGCTGAAGCTGGAGAAGCTGCGAGAGAA
GGAGCGCAAGAAGGAGGCCAAGCGCAAGATCTCCAGCCTGTCCTTCACCCTGGAGGAAGAGGAGGAGGCGGGCGAGGAGG
AGGAAGCCGTGGCTGTGGAGGAGGAGGAGCTGGAAAGGGAAGAGGTCACCACGAAGAAGAGGAAGCTGGGGAAGAACCCA
GACGTGGACACGAGCTTCTTGCCAGACCGCGACCGGGAGGAGGAGGAGAATCGGCTGCGGGAAGAGCTGCGCCAGGAGTG
GGAAGCCAAGCAGGAGAAGATCAAGAGTGAGGAGATTGAAATCACCTTCAGTTACTGGGACGGCTCCGGGCACCGGCGCA
CGGTCAAGATGAAAAAAGGCAACACGATGCAGCAGTTCCTGCAGAAGGCGCTCGAGATCCTGCGCAAGGACTTCAGTGAG
CTCAGGTCCGCGGGGGTGGAGCAGCTCATGTACATCAAGGAGGACCTGATCATTCCCCACCACCACAGCTTCTACGACTT
CATCGTCACCAAGGCACGAGGCAAGAGCGGGCCCCTCTTCAATTTCGACGTGCATGACGACGTGCGGCTGCTCAGCGACG
CCACCGTGGAGAAGGACGAGTCGCACGCGGGCAAGGTGGTGCTGCGCAGCTGGTACGAGAAGAACAAGCACATCTTCCCC
GCCAGCCGCTGGGAGCCCTACGACCCCGAGAAGAAGTGGGACAAATACACGATCCGATGA

Library Parental gene expression (RPM)
SRP014902_placenta 40 .48 RPM
SRP014902_testis 40 .88 RPM
SRP018288_heart 20 .64 RPM
SRP018288_kidney 38 .12 RPM
SRP018288_liver 22 .55 RPM
SRP018288_lung 49 .39 RPM
SRP018856_adipose 72 .20 RPM
SRP035408_brain 98 .01 RPM
SRP035408_liver 45 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000273 ortholog_one2one 1 retrogene
retro_amel_15,
Felis catus ENSFCAG00000011399 ortholog_one2one 1 retrogene
retro_fcat_100,
Homo sapiens ENSG00000071859 ortholog_one2one 1 retrogene
retro_hsap_94,
Loxodonta africana ENSLAFG00000008766 ortholog_one2one 1 retrogene
retro_lafr_43,
Myotis lucifugus ENSMLUG00000022234 ortholog_one2many 1 retrogene
retro_mluc_7,
Mustela putorius furo ENSMPUG00000009476 ortholog_one2many 1 retrogene
retro_mputfur_145,
Mus musculus ENSMUSG00000001962 ortholog_one2one 1 retrogene
retro_mmus_103,
Nomascus leucogenys ENSNLEG00000014266 ortholog_one2one 1 retrogene
retro_nleu_109,
Rattus norvegicus ENSRNOG00000045790 ortholog_one2many 1 retrogene
retro_rnor_214,
Sorex araneus ENSSARG00000006465 ortholog_one2one 1 retrogene
retro_sara_554,
Ictidomys tridecemlineatus ENSSTOG00000004448 ortholog_one2one 10 retrogenes
retro_itri_105, retro_itri_1563, retro_itri_1688, retro_itri_1691, retro_itri_1693, retro_itri_1758, retro_itri_1760, retro_itri_1762, retro_itri_1780, retro_itri_184,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_56 67.02 56.34
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Download FASTA sequences of all ENSSSCG00000025303 retrocopies