Parental gene:

SNRPN, ENSSSCG00000028124

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:11164]
Organism:Pig (Sus scrofa)
Coordinates:GL896379.1:22820..41327(-)


>ENSSSCG00000028124
ATGACCGTGGGAAAGAGCAGCAAGATGCTGCAGCACATTGACTATAGAATGAGATGTATCCTGCAAGATGGCCGGATCTT
CATTGGCACCTTTAAGGCTTTTGACAAGCATATGAACTTGATCCTCTGTGATTGTGATGAATTCAGGAAGATCAAGCCAA
AGAACGCAAAGCAGCCAGAGCGTGAAGAAAAGCGGGTTTTGGGTCTGGTGTTGCTGCGTGGGGAAAATTTGGTTTCCATG
ACTGTGGAGGGACCACCCCCCAAAGATACTGGAATTGCTCGTGTACCACTTGCTGGAGCTGCAGGAGGCCCTGGGGTTGG
CAGGGCAGCTGGCAGAGGTGTACCAGCTGGTGTTCCAATTCCCCAGGCACCTGCTGGATTAGCAGGTCCTGTCCGAGGGG
TTGGGGGGCCATCCCAACAGGTAATGACCCCACAGGGAAGAGGCACTGTAGCTGCTGCTGCAGTTGCTGCTACTGCCAGC
ATTGCTGGAGCCCCAACTCAGTATCCACCAGGCCGGGGGACTCCACCCACACCTGTTGGTCGAGCAACCCCACCTCCAGG
AATTATGGCTCCTCCACCTGGTATGAGCCCACCAATGGGCCCACCAATCGGACTTCCTCCTACTCGAGGGACGCCAATAG
GCATGCCCCCTCCAGGAATGAGACCCCCTCCACCAGGAATTAGAGGTCCACCTCCCCCAGGAATGCGTCCACCAAGACCC
TAG

Library Parental gene expression (RPM)
SRP014902_placenta 12 .48 RPM
SRP014902_testis 44 .98 RPM
SRP018288_heart 50 .13 RPM
SRP018288_kidney 72 .70 RPM
SRP018288_liver 4 .64 RPM
SRP018288_lung 17 .21 RPM
SRP018856_adipose 27 .18 RPM
SRP035408_brain 436 .17 RPM
SRP035408_liver 18 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007034 ortholog_one2one 3 retrogenes
retro_amel_1048, retro_amel_714, retro_amel_839,
Bos taurus ENSBTAG00000008251 ortholog_one2one 1 retrogene
retro_btau_620,
Canis familiaris ENSCAFG00000010127 ortholog_one2many 6 retrogenes
retro_cfam_1753, retro_cfam_1874, retro_cfam_2039, retro_cfam_627, retro_cfam_682, retro_cfam_752,
Choloepus hoffmanni ENSCHOG00000001846 ortholog_one2one 2 retrogenes
retro_chof_2275, retro_chof_385,
Cavia porcellus ENSCPOG00000020270 ortholog_one2one 1 retrogene
retro_cpor_878,
Felis catus ENSFCAG00000022298 ortholog_one2one 2 retrogenes
retro_fcat_1390, retro_fcat_1895,
Homo sapiens ENSG00000128739 ortholog_one2one 1 retrogene
retro_hsap_2580,
Gorilla gorilla ENSGGOG00000003988 ortholog_one2one 1 retrogene
retro_ggor_1615,
Loxodonta africana ENSLAFG00000009458 ortholog_one2one 1 retrogene
retro_lafr_1012,
Myotis lucifugus ENSMLUG00000023361 ortholog_one2many 3 retrogenes
retro_mluc_1192, retro_mluc_1816, retro_mluc_2156,
Macaca mulatta ENSMMUG00000023139 ortholog_one2one 1 retrogene
retro_mmul_644,
Mustela putorius furo ENSMPUG00000014638 ortholog_one2many 1 retrogene
retro_mputfur_1080,
Mus musculus ENSMUSG00000000948 ortholog_one2one 3 retrogenes
retro_mmus_1285, retro_mmus_1733, retro_mmus_665,
Oryctolagus cuniculus ENSOCUG00000003532 ortholog_one2many 4 retrogenes
retro_ocun_1291, retro_ocun_488, retro_ocun_689, retro_ocun_846,
Otolemur garnettii ENSOGAG00000007392 ortholog_one2one 5 retrogenes
retro_ogar_1179, retro_ogar_3042, retro_ogar_3060, retro_ogar_475, retro_ogar_722,
Pongo abelii ENSPPYG00000006269 ortholog_one2one 1 retrogene
retro_pabe_1900,
Pan troglodytes ENSPTRG00000006826 ortholog_one2one 1 retrogene
retro_ptro_1507,
Rattus norvegicus ENSRNOG00000015976 ortholog_one2one 6 retrogenes
retro_rnor_1122, retro_rnor_1314, retro_rnor_1485, retro_rnor_2161, retro_rnor_2462, retro_rnor_2517,
Ictidomys tridecemlineatus ENSSTOG00000001339 ortholog_one2one 1 retrogene
retro_itri_44,
Tursiops truncatus ENSTTRG00000010966 ortholog_one2one 5 retrogenes
retro_ttru_1005, retro_ttru_1051, retro_ttru_1473, retro_ttru_580, retro_ttru_600,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_350 79.65 71.67
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_sscr_405 51.43 57.92
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000028124 retrocopies