RetrogeneDB ID: | retro_fcat_1390 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:14896341..14897055(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPN | ||
Ensembl ID: | ENSFCAG00000022298 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:11164] |
Percent Identity: | 71.49 % |
Parental protein coverage: | 97.52 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHX--ILCDCDEFRKIKPKNAKQPEREEKRVLGLVL |
T.GKSSKMLQHIDY..R.ILQ.G.I..G..KAFD.H...ILCDCDEFRKIKP.N..QP..E.KRV.G.VL | |
Retrocopy | TEGKSSKMLQHIDYGTRRILQGGQILTGACKAFDEHRNLILCDCDEFRKIKPRNVRQPDHEDKRVWGPVL |
Parental | LRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQ-APAGLAGPVRGVGGPSQQ |
L.GENLVSMT..G..P.D.GIARVPLAG.AGGPGVGRAAGR.VPAGVPIP..APAGLAG.V.GVGGPSQQ | |
Retrocopy | LQGENLVSMT--GERPEDAGIARVPLAGLAGGPGVGRAAGRRVPAGVPIPR>APAGLAGAV*GVGGPSQQ |
Parental | VMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPTPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARG |
.M.PQGRG.VAA..VA..ASIAGA.T..PP..GTPPT.VG...PPPGI.APPPG..PP.GPP.G.PPA.. | |
Retrocopy | EMAPQGRGAVAASTVAVAASIAGASTPCPPR*GTPPTRVG*TPPPPGIEAPPPGVTPPVGPPVGSPPA*R |
Parental | TPIGMPPPGMRPPP-PGIRGPP-PP-GMRPPR |
.P.GMP.PG.RPP..P.IRGPP.PP.GM.PPR | |
Retrocopy | SPTGMPCPGRRPPS>PEIRGPPLPP>GMYPPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 159 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .58 RPM |
SRP017611_liver | 0 .00 RPM | 11 .83 RPM |