Parental gene:

YBX1, ENSSSCG00000028485

Aliases:None
Description:Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Organism:Pig (Sus scrofa)
Coordinates:6:156189762..156217345(-)


>ENSSSCG00000028485
ATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCTGCCGCCCCCCCCGCCGCCCCCGCCCTCAGCGCTGCCGACACCAAGCC
CGGCACGACGGGCAGCGGCGCAGGGAGCGGCGGCCCGGGCGGCCTCACATCGGCGGCGCCTGCCGGCGGGGACAAGAAGG
TCATCGGCAACAAAATCTTAGAGTCTATGATTTGGTTTCTTCAGAATAAATTTGATGCATATTTAAAACTGAATGACACC
AAGGAAGACGTATTTGTACACCAGACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGA
GACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAACGTTACAGGCCCTGGTGGAGTTCCAGTGC
AAGGCAGTAAATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGCAGGGGTCCTCCACGCAATTACCAGCAG
AATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATCAGAGAGTGCTCCCGAAGGCCAGGCCCAACAGCGCCGGCC
CTACCGCAGGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGC
AGGGAGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGACAGAATGTGTACCGGGGC
TACAGACCACGCTTCCGCAGGGGCCCTCCTCGCCAAAGACAACCCCGAGAGGACGGCAATGAAGAGGACAAGGAAAATCA
AGGAGACGAGACCCAGGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTACCGGCGCAGACGCCCAGAAA
ACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAG
GGCGGGGCTGAGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 380 .94 RPM
SRP014902_testis 472 .15 RPM
SRP018288_heart 1122 .29 RPM
SRP018288_kidney 348 .32 RPM
SRP018288_liver 320 .30 RPM
SRP018288_lung 573 .38 RPM
SRP018856_adipose 1214 .00 RPM
SRP035408_brain 705 .69 RPM
SRP035408_liver 895 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000016627 ortholog_one2one 1 retrogene
retro_dord_625,
Echinops telfairi ENSETEG00000004125 ortholog_one2one 3 retrogenes
retro_etel_1772, retro_etel_1980, retro_etel_2134,
Loxodonta africana ENSLAFG00000007597 possible_ortholog 1 retrogene
retro_lafr_804,
Macaca mulatta ENSMMUG00000013136 possible_ortholog 5 retrogenes
retro_mmul_1139, retro_mmul_1423, retro_mmul_2017, retro_mmul_423, retro_mmul_861,
Oryctolagus cuniculus ENSOCUG00000028047 possible_ortholog 2 retrogenes
retro_ocun_1519, retro_ocun_1953,
Otolemur garnettii ENSOGAG00000006784 possible_ortholog 25 retrogenes
retro_ogar_1127, retro_ogar_1246, retro_ogar_1350, retro_ogar_1371, retro_ogar_1497, retro_ogar_2011, retro_ogar_2018, retro_ogar_2302, retro_ogar_2359, retro_ogar_2607, retro_ogar_2654, retro_ogar_3170, retro_ogar_3225, retro_ogar_324, retro_ogar_3303, retro_ogar_3316, retro_ogar_3317, retro_ogar_3366, retro_ogar_3416, retro_ogar_3474, retro_ogar_448, retro_ogar_572, retro_ogar_678, retro_ogar_690, retro_ogar_753,
Ochotona princeps ENSOPRG00000008050 ortholog_one2one 11 retrogenes
retro_opri_1097, retro_opri_1114, retro_opri_115, retro_opri_1196, retro_opri_340, retro_opri_367, retro_opri_626, retro_opri_781, retro_opri_896, retro_opri_910, retro_opri_984,
Sorex araneus ENSSARG00000007896 possible_ortholog 1 retrogene
retro_sara_559,
Ictidomys tridecemlineatus ENSSTOG00000000116 ortholog_one2one 1 retrogene
retro_itri_1532,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_255 68.09 77.47
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2. retro_sscr_256 68.09 77.47
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3. retro_sscr_1157 66.46 50.31
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Download FASTA sequences of all ENSSSCG00000028485 retrocopies