Parental gene:

TFAP2C, ENSSTOG00000014299

Aliases:None
Description:transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) [Source:HGNC Symbol;Acc:11744]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393685.1:491273..498732(+)


>ENSSTOG00000014299
ATGTTGTGGAAAATAACCGATAATGTCAAGTACGAAGAGGACTGCGAGGATCGCCACGATGCGAGTAGCAACGGGAACCC
GCGCATCCCCCACCTCTCCTCGGCCGGGCAGCATCTTTACAGCTCCGCACCGCCGCTGTCCCACACTGGAGTCGCCGAAT
ACCAGCCGCCACCCTACTTTCCACCGCCCTACCAGCAGCTGGCTTACTCTCAGTCGGCAGATCCCTACTCGCATCTGGGC
GAAGCCTACGCTGCGGCCATCAACCCCCTGCACCAGCCTGCAGCCGCCGGCAACCAACAGCAGGCCTGGCCCGGCCGCCA
GAGCCAGGAGGGCGCCGCCCTGCCTTCGCACCACGCGCGCCCGGCCAGCCTGCTCCCCCACCTCTCCGGGCTGGAGGGAG
GTGCCGTGGGCGCCCGCAGGGATGCCTACCGCCGCTCGGACCTGCTGTTGCCCCACGCACACGCCTTGGACGCCGCGGGG
CTGGCGGAGAACCTGGGGCTCCACGACATGGCTCACCAGATGGAAGAGGTGCAGAACGTTGACGACCCACACTTGCTTGG
GCCCGATCAGACTGTAATCCGCAAAGGTCCCATTTCCATGACGAAGAACCCCCTAGGTCTCCCCTGTCAGAAGGAGCTGG
TGGGAGCCGTGATGAATCCCAGTGAAGTCTTCTGCTCGGTTCCAGGAAGACTGTCCCTCCTCAGCTCCACGTCCAAATAC
AAAGTGACGGTGGCTGAAGTGCAGAGGCGGTTGTCACCGCCTGAATGTTTAAATGCCTCGCTGCTGGGAGGTGTTCTCAG
AAGAGCCAAGTCCAAAAATGGAGGCCGATCTTTGCGGGAGAAGTTGGACAAGATTGGGCTGAATCTTCCCGCTGGGAGAC
GGAAAGCTGCTCATGTGACCCTCTTGACATCCTTGGTGGAAGGTGAAGCTGTTCACTTGGCCCGGGACTTTGCGTACGTC
TGTGAAGCCGAGTTTCCTAGTAAGCCAGTGGCCGAATATTTAACCAGGCCTCACCTGGGAGGGCGGAATGAGATGGCGAC
GAGGAAGAATACGCTGCTGGCAGCTCAGCAAGTGTGTAAAGAATTCACGGACCTCCTCAATCAGGAC

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011025 ortholog_one2one 1 retrogene
retro_chof_1226,
Macropus eugenii ENSMEUG00000007703 ortholog_one2one 1 retrogene
retro_meug_166,
Myotis lucifugus ENSMLUG00000010003 ortholog_one2many 2 retrogenes
retro_mluc_284, retro_mluc_5,
Monodelphis domestica ENSMODG00000016445 ortholog_one2one 1 retrogene
retro_mdom_728,
Otolemur garnettii ENSOGAG00000033901 ortholog_one2many 1 retrogene
retro_ogar_1767,
Pan troglodytes ENSPTRG00000013654 ortholog_one2one 1 retrogene
retro_ptro_1933,
Ictidomys tridecemlineatus ENSSTOG00000001781 within_species_paralog 1 retrogene
retro_itri_1860,
Tursiops truncatus ENSTTRG00000005983 ortholog_one2one 1 retrogene
retro_ttru_535,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_1741 75.52 50.95
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2. retro_itri_1801 71.94 67.21
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3. retro_itri_1813 79.65 60.70
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Download FASTA sequences of all ENSSTOG00000014299 retrocopies