RetrogeneDB ID: retro_mluc_284

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429816:7338928..7340185(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000016754
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000010003
• Aliases: None
• Description: None

Sequence

>retro_mluc_284
CCTTCGCCACCAGGCTTCGAGGGCGCGCCGCCCCAGGATCGCCAGGACAGGAGCAGCGATGGGAACCCGCCTCTCCCTCA
CCTCTCCTCCGCCGGGCAACATCTCTACAGCCCCGCGCCGCCCCTCTCCCATACCGGAGTTGCCCAATACCAGCCACCAC
CCTACTTTCCACCTCCCTACCAGCTGCTGGCTTATTCCCAGTCGGCAGGCCCCTACTCACATCTGGGAGAAGCGAACGCT
GCCATCAACCCCCTGCACCAGCCAGCGCCTGGCCGTCAGCCGCAGGCCTGGCCCGGCCGCCAGAGCCAGGGGGCTGCCGG
CTGGCCCTCCCACCACGGGCGCCCGGCCGGCCTGCTACCCCATCTCTCCGGGCGGGAAGCAGCGGGGCGGGCGGAGAACC
TGGGCCTTCATGACATGGGGCAACCGATGGACGAGGTGCAGACGGTGGATGAGCAGCACCGGCTTCTGCATGATCAGACT
GGGATTCGCAAAGGTCCCATTTCAATGACCAACAGCCCTTTGAGCCTCCCCTGTCAGGAGGAGCTGGCGGGGGCTGTGAT
GGACCCCAGGGAGGTCTTCTGCTCCGTCCCCGGAAGATTGTCCCTCCTGGGCTCCACGTCCAAATACAAAGTGACAGTTG
CCGAAGTCCAGAGGCGATTGTCCCTGCCTGAGTGCTTAAATGCCTCCGTCCTGGGAGGTGTTCTCAGAAGGGCCAAGTCT
AAAAATGGATGCCGGTCCTTGCGGGAGAAGCTGCACAAGATGGGGCTGAACCTTCCAGCCGGCAGACGGAAGGCTGCCCA
CGTCACCCTCCTGACGTCCTTAGTGGAAGGGGAGGCCGTTCACTTGGCTCGGGACTTCGTATCTGTCTGTGAAGCCGAGT
TTCCCAGCAAGCGGGTGGCCGAGTACTTAACTGGACCTCATCTTGGAGGATGGAATGAGATGGCAACGAGGAAGGACATG
CTGCTGGCCGCACAGCAAGTGTGTCAAGAATTCACGGGCCTTCTCCACCAAGACCCAACACCCAACGGGGACAGGCCGGG
CCCGGTCTCAGAGGCGAACATTCAGAACTGCCTGTCTCACTTCAGCCTGGTGACCCACGGGTTTGGCAGCCAGGCCATCT
GCGCCGCCGTGTCTGCGATGCAGAACTACATACAAGAGGCCTTGGTCATCATAGACAAGTCATCCATGAGTCCCGGGGAC
CGGAGTCCAGCCGATTCCAGCAAGACCTTGGAGAAGATGGAGAAGCATCAGAAATGA

Alignment

ORF - retro_mluc_284 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.09 %
• Parental protein coverage: 67.11 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LLPHAHALEAAGLAENLGLHDMGQQMDEVQIVDEQHLLLHDQTVIRKGPISMTKNPLSLPCQKELVGAVM
          LLPH....EAAG.AENLGLHDMGQ.MDEVQ.VDEQH.LLHDQT.IRKGPISMT..PLSLPCQ.EL.GAVM
Retrocopy LLPHLSGREAAGRAENLGLHDMGQPMDEVQTVDEQHRLLHDQTGIRKGPISMTNSPLSLPCQEELAGAVM

Parental  NPSEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKIGLN
          .P.EVFCSVPGRLSLL.STSKYKVTVAEVQRRLS.PECLNAS.LGGVLRRAKSKNG.RSLREKL.K.GLN
Retrocopy DPREVFCSVPGRLSLLGSTSKYKVTVAEVQRRLSLPECLNASVLGGVLRRAKSKNGCRSLREKLHKMGLN

Parental  LPAGRRKAAHVTLLTSLVEGEAVHLARDFAYVCEAEFPSKPVAEYLTRPHLGGRNEMATRKNMLLAAQQV
          LPAGRRKAAHVTLLTSLVEGEAVHLARDF..VCEAEFPSK.VAEYLT.PHLGG.NEMATRK.MLLAAQQV
Retrocopy LPAGRRKAAHVTLLTSLVEGEAVHLARDFVSVCEAEFPSKRVAEYLTGPHLGGWNEMATRKDMLLAAQQV

Parental  CKEFTDLLNQDRTPNGNNRPAPVLEANIQNCLSHFSLITHGFGSQAICAAVSAMQNYIKEALVIIEKSYM
          C.EFT.LL.QD.TPNG..RP.PV.EANIQNCLSHFSL.THGFGSQAICAAVSAMQNYI.EALVII.KS.M
Retrocopy CQEFTGLLHQDPTPNG-DRPGPVSEANIQNCLSHFSLVTHGFGSQAICAAVSAMQNYIQEALVIIDKSSM

Parental  NPGDQSPADSSKTLEKMEKHRK
          .PGD.SPADSSKTLEKMEKH.K
Retrocopy SPGDRSPADSSKTLEKMEKHQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_284 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000011025	1 retrocopy	retro_chof_1226,
Macropus eugenii	ENSMEUG00000007703	1 retrocopy	retro_meug_166,
Myotis lucifugus	ENSMLUG00000010003	2 retrocopies	retro_mluc_284 , retro_mluc_5,
Monodelphis domestica	ENSMODG00000016445	1 retrocopy	retro_mdom_728,
Otolemur garnettii	ENSOGAG00000033901	1 retrocopy	retro_ogar_1767,
Pan troglodytes	ENSPTRG00000013654	1 retrocopy	retro_ptro_1933,
Ictidomys tridecemlineatus	ENSSTOG00000014299	3 retrocopies	retro_itri_1741, retro_itri_1801, retro_itri_1813,
Tursiops truncatus	ENSTTRG00000005983	1 retrocopy	retro_ttru_535,