Parental gene:

ppia, ENSXETG00000018981

Aliases:None
Description:peptidylprolyl isomerase A (cyclophilin A) [Source:Jamboree;Acc:XB-GENE-5778000]
Organism:Xenopus (Xenopus tropicalis)
Coordinates:GL172666.1:2283847..2289803(-)


>ENSXETG00000018981
CTGTTTAGAGTTCAGGGGGTTAGGAAGCTGCACGTTGCGCTCACGGCAAGGCACTGTTTATTTTCATTCTGCACTATGGC
TTTACCCAGGGTCTTTTTCGACATCGCCGTTGATGGCTGCCCGATGGGCCGTATTATCATGGAGCTCAGGAGTGATGTGG
TTCCAAAGACTGCAGAGAACTTCCGTGCCCTTTGCACAAACGAGAAGGGGTTTGGCTACAAGAACTCTGGCTTCCACAGA
ATTATCCCTGAATTCATGTGCCAGGGAGGTGACTTCACCAACCACAATGGAACTGGTGGGAAATCTATCTACGGAAACAA
GTTTGCTGATGAGAACTTCCAGCTGAGGCACACTGGCCCTGGAATCCTCTCTATGGCCAATGCTGGAGCAAATACAAACG
GCTCCCAGTTCTTCATCTGCACTGCTAAGACCTCCTGGCTTGATGGAAAGCATGTCGTGTTCGGGACCGTTATTGATGGC
ATGGATGTCGTGAGAAATATGGAGAAACTAGGTTCTCAGTCTGGAAAACCCGCCAAAAAAATAGTTATTGCTAACTGTGG
TCAGCTTTAA

Library Parental gene expression (RPM)
SRP007412_brain 602 .55 RPM
SRP007412_skeletal_muscle 92 .35 RPM
SRP007412_heart 512 .45 RPM
SRP007412_kidney 512 .45 RPM
SRP007412_liver 1377 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000007365 possible_ortholog 1 retrogene
retro_cpor_560,
Equus caballus ENSECAG00000008796 possible_ortholog 3 retrogenes
retro_ecab_507, retro_ecab_649, retro_ecab_732,
Homo sapiens ENSG00000108179 possible_ortholog 1 retrogene
retro_hsap_1436,
Microcebus murinus ENSMICG00000007086 possible_ortholog 8 retrogenes
retro_mmur_1266, retro_mmur_218, retro_mmur_515, retro_mmur_568, retro_mmur_605, retro_mmur_694, retro_mmur_769, retro_mmur_87,
Myotis lucifugus ENSMLUG00000016233 possible_ortholog 1 retrogene
retro_mluc_339,
Nomascus leucogenys ENSNLEG00000010567 possible_ortholog 1 retrogene
retro_nleu_70,
Procavia capensis ENSPCAG00000009406 possible_ortholog 1 retrogene
retro_pcap_275,
Pan troglodytes ENSPTRG00000002669 possible_ortholog 1 retrogene
retro_ptro_979,
Pteropus vampyrus ENSPVAG00000001713 possible_ortholog 2 retrogenes
retro_pvam_380, retro_pvam_623,
Tupaia belangeri ENSTBEG00000015457 possible_ortholog 1 retrogene
retro_tbel_1906,
Tursiops truncatus ENSTTRG00000014385 possible_ortholog 1 retrogene
retro_ttru_1314,
Vicugna pacos ENSVPAG00000010049 possible_ortholog 2 retrogenes
retro_vpac_261, retro_vpac_86,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_xtro_20 97.01 70.90
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Download FASTA sequences of all ENSXETG00000018981 retrocopies