Parental gene:

PPIE, ENSCPOG00000007365

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_143:1718401..1731494(+)


>ENSCPOG00000007365
ATGGCCACTACGAAGCGCGTGCTGTACGTGGGAGGGCTGGCAGAAGAGGTGGATGACAAAGTTCTACATGCTGCTTTTAT
TCCTTTTGGAGACATCACAGATATTCAGATTCCTCTGGATTATGAAACAGCAGAAAAGCACCGAGGATTTGCTTTTGTTG
AATTTGAGTTGGCAGAGGATGCAGCAGCAGCTATTGACAACATGAATGAATCTGAGCTCTTTGGACGGACAATTCGTGTC
AATTTGGCTAAACCAATGAGAATTAAAGAGGGCTCTTCTAGACCAGTTTGGTCAGACGATGACTGGCTAAAGAAGTTTTC
TGGGAAGACTCTTGAAGAGAATAAAGAGGAAGAAGGGACAGAAACTCCCAAAGCAGAAACCCAGGAGGGAGAGCCCCCTG
CAAAAAAGGCCCGGTCAAATCCTCAGGTGTACATGGACATCAAGATTGGGAACAAGCCAGCCGGCCGCATCCAGATGCTC
CTGCGTTCTGATGTTGTGCCCATGACAGCGGAGAATTTCCGCTGCCTGTGTACCCACGAAAAGGGCTATGGCTTCAAGGG
AAGCAGCTTCCACCGCATCATCCCCCAGTTCATGTGCCAGGGTGGGGATTTCACAAACCACAATGGCACCGGGGGCAAGT
CCATCTACGGGAAGAAGTTTGATGATGAAAATTTTATCCTCAAACACACAGGACCAGGCCTCCTCTCCATGGCCAACTCT
GGCCCAAATACCAACGGCTCCCAGTTCTTCCTGACCTGTGACAAGACGGACTGGCTGGATGGCAAGCACGTGGTGTTTGG
AGAGGTCACCGAAGGTCTGGATGTCTTGCGGCAGATTGAAGCCCAGGGCAGCAAGGACGGGAAACCAAAGCAGAAGGTGA
TCATCGCCGACTGTGGGGAGTACATGTGA

Library Parental gene expression (RPM)
SRP017611_brain 10 .81 RPM
SRP017611_kidney 16 .96 RPM
SRP017611_liver 13 .41 RPM
SRP040447_lung 20 .45 RPM
SRP040447_skeletal_muscle 13 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000002632 other_paralog 11 retrogenes
retro_cpor_1152, retro_cpor_1284, retro_cpor_1395, retro_cpor_1493, retro_cpor_165, retro_cpor_192, retro_cpor_251, retro_cpor_372, retro_cpor_642, retro_cpor_902, retro_cpor_960,
Myotis lucifugus ENSMLUG00000016233 ortholog_one2many 1 retrogene
retro_mluc_339,
Tursiops truncatus ENSTTRG00000014385 ortholog_one2one 1 retrogene
retro_ttru_1314,
Vicugna pacos ENSVPAG00000010049 ortholog_one2one 2 retrogenes
retro_vpac_261, retro_vpac_86,
Xenopus tropicalis ENSXETG00000018981 possible_ortholog 1 retrogene
retro_xtro_20,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_560 70.64 70.53
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000007365 retrocopies