>retro_alyr_18
ATGAGAACTAAATATCTTTCTTTACTAGTAGTCCTTGTTGTTTTGGCTTCCAATGAAGTTATTGCCAAGAAACACTCTTC
AACACCTAAACTAAGAAGAAGTGATTTCCCAAAAGATTTTCTTTTTGGAGCTGCAACATCTGCTTACCAAGTCGAAGGAG
CTGCTCATGAAGATGGTAGAGGACCAAGTATTTGGGATACATTCTCTGAAAAATATCCGGAAAAGATAAAAGATGGTAGC
AATGGATCTATTGCAAGTGATTCTTACCATCTTTACAAAGAAGATGTGGGTTTACTACATCAAATTGGTTTTGGTGCCTA
TAGATTCTCCATCTCGTGGTCGAGGATTTTGCCACGTGGGAATCTAAAAGGAGGAATCAACCAAGCTGGTATTGACTATT
ACAACAACTTGATCAATGAGCTTTTGTCTAAAGGAATTAAGCCTTTCGCCACCATTTTCCATTGGGACACACCACAAGAT
ATTGAAGATGCTTACGGAGGATTTCTTGGTGCGGAGATTGTGAATGATTTCCGTGATTATGCGGATATTTGTTTCAAGAA
TTTTGGAGATCGAGTTAAGCATTGGATGACATTAAACGAGCCATTAACTGTGGTGCAACAAGGATATGTTGCTGGTGTAA
TGGCTCCAGGAAGGTGCTCAAAATTCACAAATCCTAATTGCACTGCGGGAGATGGAGCTACAGAGCCTTATATTGTTGGT
CACAACCTAATCCTTGCACACGGAGAAGCGGTCAGGGTATACAGAGAAAAATATAAAGCATCTCAAAATGGTCAAGTTGG
TATCGCTTTGAACGCGGGTTGGAACTTACCTTATACAGAATCAGCCGAAGATAGGTTAGCTGCGGCACGAGCCATGGCCT
TCACATTCGACTATTTCATGGAGCCGCTTGTGACCGGTAAATACCCGGTTGACATGGTCAATAACGTAAAAGGCGGTCGC
TTACCTACATTTACTGCTAAACAATCTAAAATGCTAAAGGGATCATATGATTTCATTGGCATCAATTATTACTCATCGTC
TTACGCTAAGGATGTTCCTTGCTCAAGCGAAAACGTTACACAATTCTCTGATCCTTGTGCTAGCGTCACAGGTGAAAGAG
AAGGAGTTCCCATCGGTCCAAAGGCAGCATCGGATTGGCTTTTGATATATCCAAAGGGAATTCGTGATCTCCTCCTCTAT
GCAAAATACAAGTTCAAGGATCCTGTCCTGTACATAACCGAGAACGGGAGAGATGAAGCTAGTACCGGTAAAATCGACCT
TAAAGATAGTGAGAGGATCGATTACTATGCTCGACATTTGAAGATGGTTCAAGACGCTATCTCAATTGGAGCCAATGTGA
AGGGATTCTTTGCATGGTCTTTGCTAGATAACTTTGAATGGGCAACAGGTTACGCGGTCCGGTTCGGACTAGTTTACGTG
GATTTCAATGATGGACGTAAGAGATATCCTAAGAAATCAGCAAAATGGTTCACAAAATTGTTGAGCGAAAAGAAAAGGAA
TTGA
ORF - retro_alyr_18 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.35 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MKGDHLSLLVVLIVLASNEVLANNNSSTPKLRRSDFPEDFIFGSATSAYQVEGAAHEDGRGPSIWDTFSE |
| M....LSLLVVL.VLASNEV.A...SSTPKLRRSDFP.DF.FG.ATSAYQVEGAAHEDGRGPSIWDTFSE |
Retrocopy | MRTKYLSLLVVLVVLASNEVIAKKHSSTPKLRRSDFPKDFLFGAATSAYQVEGAAHEDGRGPSIWDTFSE |
|
Parental | KYPEKIKDGSNGSVADNSYHLYKEDVALLHQIGFNAYRFSISWSRILPRGNLRGGINQAGIDYYNNLINA |
| KYPEKIKDGSNGS.A..SYHLYKEDV.LLHQIGF.AYRFSISWSRILPRGNL.GGINQAGIDYYNNLIN. |
Retrocopy | KYPEKIKDGSNGSIASDSYHLYKEDVGLLHQIGFGAYRFSISWSRILPRGNLKGGINQAGIDYYNNLINE |
|
Parental | LLSKGIKPFATMFHWDTPQALEDAYGGFRGAEIVNDFRDYADICFKSFGDRVKHWMTLNEPLTVVQQGYV |
| LLSKGIKPFAT.FHWDTPQ..EDAYGGF.GAEIVNDFRDYADICFK.FGDRVKHWMTLNEPLTVVQQGYV |
Retrocopy | LLSKGIKPFATIFHWDTPQDIEDAYGGFLGAEIVNDFRDYADICFKNFGDRVKHWMTLNEPLTVVQQGYV |
|
Parental | AGVMAPGRCSKFTNPNCTGGNGATEPYIVGHNLILAHGAAVQVYREKYKASQNGQVGIALNAGWNLPYTE |
| AGVMAPGRCSKFTNPNCT.G.GATEPYIVGHNLILAHG.AV.VYREKYKASQNGQVGIALNAGWNLPYTE |
Retrocopy | AGVMAPGRCSKFTNPNCTAGDGATEPYIVGHNLILAHGEAVRVYREKYKASQNGQVGIALNAGWNLPYTE |
|
Parental | SPEDRLAAARAMAFTFDYFMEPLVTGKYPVDMVNNVKGGRLPIFTAQQSKMLKGSYDFIGINYYSSTYAK |
| S.EDRLAAARAMAFTFDYFMEPLVTGKYPVDMVNNVKGGRLP.FTA.QSKMLKGSYDFIGINYYSS.YAK |
Retrocopy | SAEDRLAAARAMAFTFDYFMEPLVTGKYPVDMVNNVKGGRLPTFTAKQSKMLKGSYDFIGINYYSSSYAK |
|
Parental | DVPCSTKDVTMFSDPCASVTGERDGVPIGPKAASDWLLIYPKGIRDLVLYAKYKFKDPVMYITENGRDEF |
| DVPCS...VT.FSDPCASVTGER.GVPIGPKAASDWLLIYPKGIRDL.LYAKYKFKDPV.YITENGRDE. |
Retrocopy | DVPCSSENVTQFSDPCASVTGEREGVPIGPKAASDWLLIYPKGIRDLLLYAKYKFKDPVLYITENGRDEA |
|
Parental | STNKIFLQDGDRIDYYARHLEMVQDAISVGANVKGFFAWSLLDNFEWATGYTVRFGLVYVDFKDGCKRYP |
| ST.KI.L.D..RIDYYARHL.MVQDAIS.GANVKGFFAWSLLDNFEWATGY.VRFGLVYVDF.DG.KRYP |
Retrocopy | STGKIDLKDSERIDYYARHLKMVQDAISIGANVKGFFAWSLLDNFEWATGYAVRFGLVYVDFNDGRKRYP |
|
Parental | KKSAEWFKKLLNEKKNN |
| KKSA.WF.KLL.EKK.N |
Retrocopy | KKSAKWFTKLLSEKKRN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Arabidopsis lyrata was not studied using RNA-Seq expression data.
Arabidopsis lyrata was not studied using ChIP-Seq data.
Arabidopsis lyrata was not studied using EST data.
Arabidopsis lyrata was not studied using FANTOM5 data.
retro_alyr_18 was not experimentally validated.
Retrocopy orthology:
Arabidopsis lyrata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.