RetrogeneDB ID: | retro_amel_930 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192753.1:1107496..1107915(+) | ||
Located in intron of: | ENSAMEG00000017009 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENOPH1 | ||
Ensembl ID: | ENSAMEG00000005140 | ||
Aliases: | None | ||
Description: | enolase-phosphatase 1 [Source:HGNC Symbol;Acc:24599] |
Percent Identity: | 60.99 % |
Parental protein coverage: | 53.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EEEECQQDVSLLRKQAEEDSHLDGA-VPIPAASGHGGGDPQQMIQAVVDNVCWQMSLDRKTTALKQLQGH |
.EEECQQD.S.LR.QAEEDSH.D.......A.SG.G..D.Q.MIQA.VDNVCWQ.SL..KT.AL...QG. | |
Retrocopy | KEEECQQDLSPLR*QAEEDSHRDRV<ILTSATSGNGVDDLQEMIQAAVDNVCWQRSLGAKTMALTEMQGF |
Parental | MWRAAFAAGRMKAEFFEDVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGH |
..R..F.AGR..A.F.E.VVPA.RKWREAG..V..YSSG.V.AQKL...HSTE...LELV...FD.K.GH | |
Retrocopy | CGRQPFTAGRVRAAFTEYVVPAARKWREAGTRVSLYSSGRVGAQKL*RVHSTEEGVLELVVSFFDAKVGH |
Parental | K |
K | |
Retrocopy | K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005140 | 2 retrocopies |
retro_amel_1186, retro_amel_930 ,
|
Choloepus hoffmanni | ENSCHOG00000003283 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000015251 | 2 retrocopies | |
Equus caballus | ENSECAG00000019612 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004274 | 1 retrocopy | |
Homo sapiens | ENSG00000145293 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003719 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008619 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011458 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014460 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002502 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014887 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016218 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001800 | 1 retrocopy |