RetrogeneDB ID: | retro_ptro_1960 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 3:193061571..193062039(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENOPH1 | ||
Ensembl ID: | ENSPTRG00000016218 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.05 % |
Parental protein coverage: | 59.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRMKAEFFADVVPAVRKWREAGMKV |
GNGVDDLQQMIQAVVD.VCWQMSLD.KTT..KQLQ.H..RAAFTA..MKAEFFADV.PAVRKW.EAGMKV | |
Retrocopy | GNGVDDLQQMIQAVVDKVCWQMSLDGKTTMFKQLQDHT*RAAFTARPMKAEFFADVFPAVRKWKEAGMKV |
Parental | YIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASA |
YIYSSGS.EAQKL.FG.S..G.ILELVDG.FDTKIGHKVE.ESY..IAD..G.STNNILFLTDVT.EA.A | |
Retrocopy | YIYSSGSAEAQKLIFGQSAKGKILELVDGPFDTKIGHKVENESYQRIADCTGGSTNNILFLTDVTQEAGA |
Parental | AEEADVHVAVVVRPGN |
AEEADVHVAVVVR.G. | |
Retrocopy | AEEADVHVAVVVRLGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 46 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 46 .03 RPM |
SRP007412_heart | 0 .00 RPM | 12 .45 RPM |
SRP007412_kidney | 0 .03 RPM | 20 .74 RPM |
SRP007412_liver | 0 .00 RPM | 11 .56 RPM |
SRP007412_testis | 0 .00 RPM | 14 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2900 |
Gorilla gorilla | retro_ggor_2010 |
Pongo abelii | retro_pabe_2399 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005140 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003283 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000015251 | 2 retrocopies | |
Equus caballus | ENSECAG00000019612 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004274 | 1 retrocopy | |
Homo sapiens | ENSG00000145293 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003719 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008619 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011458 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014460 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002502 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014887 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016218 | 1 retrocopy |
retro_ptro_1960 ,
|
Tursiops truncatus | ENSTTRG00000001800 | 1 retrocopy |