RetrogeneDB ID: | retro_btau_692 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:23909359..23910079(+) | ||
Located in intron of: | ENSBTAG00000019272 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSBTAG00000014872 | ||
Aliases: | CAPNS1, CAPN4 | ||
Description: | Calpain small subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:P13135] |
Percent Identity: | 70. % |
Parental protein coverage: | 90.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VLGGLISGAGGGGGG--GGGGGGGGGGTAMRILGGVISAISEAAA-QYNPEPVPPRTHYSNIEANESEEV |
.L.G...G.G...GG..GGG....GGG....I.GG....ISEAAA.QY.PEP.P...H....EANESEEV | |
Retrocopy | ILEGANQGLGQALGGLLGGGDQRRGGGDIGGIVGGILNFISEAAAAQYTPEPPPTQQHFTDVEANESEEV |
Parental | RQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLW |
R.FR..FAQLAG.DMEV.AT.LMNILNKV...H.DLK.DGF..DTCRS.V.VMDSDTTGKLGFEEFKYLW | |
Retrocopy | RRFRQQFAQLAGPDMEVGATDLMNILNKVLSKHKDLKSDGFSLDTCRSIVSVMDSDTTGKLGFEEFKYLW |
Parental | NNIKKWQAVYKQFDVDRSGTIGSSELPGAFEAAGFRLNEHLYNMIIRRYSDEGGNMDFDNFISCLVRLDA |
NNIKKWQ.VYKQ.D.D.SG..GSS.LPGA..AAGF.LNE.LY.MI.RRY..E.G.MDF.NFISCLVRLDA | |
Retrocopy | NNIKKWQCVYKQYDRDQSGFLGSSQLPGALQAAGFQLNEQLYQMIVRRYAEEDGSMDFNNFISCLVRLDA |
Parental | MFRAFKSLDKDGTGQIQVNIQEWLQLTMYS |
MFRAFKSLD.D..G.IQV.IQEWLQLTMYS | |
Retrocopy | MFRAFKSLDRDADGLIQVSIQEWLQLTMYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 29 .49 RPM |
ERP005899_muscle | 0 .58 RPM | 192 .47 RPM |
SRP017611_brain | 0 .05 RPM | 157 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 214 .86 RPM |
SRP017611_liver | 0 .00 RPM | 51 .80 RPM |
SRP030211_testis | 0 .03 RPM | 300 .88 RPM |