Parental gene:

Capns1, ENSRNOG00000045747

Aliases:None
Description:Calpain small subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q64537]
Organism:Rat (Rattus norvegicus)
Coordinates:1:92195710..92201110(-)


>ENSRNOG00000045747
ATGTTCTTGGTGAATTCGTTCTTGAAGGGCGGCGGTGGCGGTGGGGGAGGCGGGGGTCTGGGCGGGGGCCTGGGCAATGT
GCTCGGAGGCCTGATCAGCGGAGCTGCTGGAGGCGGCGGCGGTGGAGGCGGCGGTGGCGGCATGGGACTGGGAGGAGGTG
GCGGAGGCGGTGGAACAGCCATGCGTATCCTGGGCGGAGTCATTAGCGCCATCAGCGAGGCTGCTGCGCAGTACAACCCG
GAGCCCCCGCCCCCACGTAGCCATTACTCTAATATTGAGGCCAACGAGAGTGAAGAGGAACGTCAGTTCAGGAAACTTTT
TGTCCAGCTGGCTGGAGACGACATGGAGGTCAGCGCTACAGAACTCATGAATATCCTCAACAAGGTCGTGACCCGACACC
CAGATCTGAAAACTGATGGGTTCGGCATTGACACTTGTCGGAGCATGGTGGCTGTTATGGATAGTGACACCACAGGCAAG
CTGGGCTTTGAGGAGTTCAAGTACCTCTGGAACAACATTAAAAAGTGGCAGGGTATATACAAACGCTTTGATACTGACCG
ATCAGGGACCATTGGTAGCAATGAACTCCCAGGGGCCTTTGAGGCAGCAGGATTCCACCTGAATCAGCATATCTACAGCA
TGATCATCCGCCGCTACTCGGACGAGACCGGGAACATGGATTTCGATAACTTCATCAGCTGCTTGGTCAGGCTGGATGCC
ATGTTCCGT

Library Parental gene expression (RPM)
SRP017611_liver 0 .00 RPM
SRP017611_kidney 0 .07 RPM
SRP017611_brain 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000000511 ortholog_one2many 1 retrogene
retro_acar_205,
Ailuropoda melanoleuca ENSAMEG00000001024 ortholog_one2many 1 retrogene
retro_amel_136,
Bos taurus ENSBTAG00000014872 ortholog_one2many 2 retrogenes
retro_btau_1126, retro_btau_692,
Canis familiaris ENSCAFG00000031314 ortholog_one2many 1 retrogene
retro_cfam_942,
Callithrix jacchus ENSCJAG00000009594 ortholog_one2many 1 retrogene
retro_cjac_2940,
Cavia porcellus ENSCPOG00000000115 ortholog_one2many 1 retrogene
retro_cpor_1131,
Equus caballus ENSECAG00000012210 ortholog_one2many 1 retrogene
retro_ecab_707,
Echinops telfairi ENSETEG00000007650 possible_ortholog 2 retrogenes
retro_etel_1190, retro_etel_60,
Felis catus ENSFCAG00000014149 ortholog_one2many 1 retrogene
retro_fcat_1691,
Homo sapiens ENSG00000126247 ortholog_one2many 1 retrogene
retro_hsap_98,
Gorilla gorilla ENSGGOG00000003699 ortholog_one2many 2 retrogenes
retro_ggor_1241, retro_ggor_263,
Microcebus murinus ENSMICG00000010255 possible_ortholog 1 retrogene
retro_mmur_416,
Myotis lucifugus ENSMLUG00000024944 ortholog_one2many 1 retrogene
retro_mluc_2336,
Macaca mulatta ENSMMUG00000000249 ortholog_one2many 2 retrogenes
retro_mmul_1334, retro_mmul_1567,
Monodelphis domestica ENSMODG00000014179 ortholog_one2many 1 retrogene
retro_mdom_410,
Mustela putorius furo ENSMPUG00000005617 ortholog_one2many 1 retrogene
retro_mputfur_444,
Mus musculus ENSMUSG00000001794 ortholog_one2many 1 retrogene
retro_mmus_80,
Nomascus leucogenys ENSNLEG00000011712 ortholog_one2many 2 retrogenes
retro_nleu_1328, retro_nleu_992,
Ornithorhynchus anatinus ENSOANG00000002736 possible_ortholog 1 retrogene
retro_oana_113,
Oryctolagus cuniculus ENSOCUG00000013093 possible_ortholog 1 retrogene
retro_ocun_1095,
Otolemur garnettii ENSOGAG00000006992 possible_ortholog 1 retrogene
retro_ogar_1956,
Ochotona princeps ENSOPRG00000016562 possible_ortholog 2 retrogenes
retro_opri_181, retro_opri_486,
Procavia capensis ENSPCAG00000006353 possible_ortholog 1 retrogene
retro_pcap_165,
Pongo abelii ENSPPYG00000009898 ortholog_one2many 2 retrogenes
retro_pabe_1359, retro_pabe_448,
Pelodiscus sinensis ENSPSIG00000012793 ortholog_one2many 1 retrogene
retro_psin_45,
Pan troglodytes ENSPTRG00000010887 ortholog_one2many 2 retrogenes
retro_ptro_1112, retro_ptro_168,
Pteropus vampyrus ENSPVAG00000012885 ortholog_one2many 3 retrogenes
retro_pvam_1375, retro_pvam_639, retro_pvam_737,
Sorex araneus ENSSARG00000004266 ortholog_one2many 1 retrogene
retro_sara_215,
Sus scrofa ENSSSCG00000030149 ortholog_one2many 2 retrogenes
retro_sscr_495, retro_sscr_73,
Ictidomys tridecemlineatus ENSSTOG00000026235 ortholog_one2many 1 retrogene
retro_itri_342,
Vicugna pacos ENSVPAG00000008074 ortholog_one2many 1 retrogene
retro_vpac_64,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1447 63.55 87.65
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2. retro_rnor_2145 79.21 71.19
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Download FASTA sequences of all ENSRNOG00000045747 retrocopies