Parental gene: | CHCHD2, ENSPTRG00000019209 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:54759799..54764703(-) |
>ENSPTRG00000019209
ATGCCGCGTGGAAGCCGAAGCCGCACCTCCCGCATGGCCCCTCCGGCCAGCCGGGCCCCTCAGATGAGAGCTGCACCCAG
GCCAGCACCAGTCGCTCAGCCACCAGCAGCGGCACCCCCATCTGCAGTTGGCTCTTCTGCTGCTGCGCCCCGGCAGCCAG
GTCTGATGGCCCAGATGGCAACCACTGCAGCTGGCGTGGCTGTGGGCTCTGCTGTGGGGCACACACTGGGTCACGCCATT
ACTGGGGGCTTCAGTGGAGGAAGTAATGCTGAGCCTGCGAGGCCTGACATCACTTACCAGGAGCCTCAGGGAACCCAGCC
AGCACAGCAGCAGCAGCCTTGCCTCTATGAGATCAAACAGTTTCTGGAGTGTGCCCAGAACCAGGGTGACATCAAGCTCT
GTGAGGGTTTCAATGAGGTGCTGAAACAGTGCCGACTTGCAAACGGATTGGCCTAA
ATGCCGCGTGGAAGCCGAAGCCGCACCTCCCGCATGGCCCCTCCGGCCAGCCGGGCCCCTCAGATGAGAGCTGCACCCAG
GCCAGCACCAGTCGCTCAGCCACCAGCAGCGGCACCCCCATCTGCAGTTGGCTCTTCTGCTGCTGCGCCCCGGCAGCCAG
GTCTGATGGCCCAGATGGCAACCACTGCAGCTGGCGTGGCTGTGGGCTCTGCTGTGGGGCACACACTGGGTCACGCCATT
ACTGGGGGCTTCAGTGGAGGAAGTAATGCTGAGCCTGCGAGGCCTGACATCACTTACCAGGAGCCTCAGGGAACCCAGCC
AGCACAGCAGCAGCAGCCTTGCCTCTATGAGATCAAACAGTTTCTGGAGTGTGCCCAGAACCAGGGTGACATCAAGCTCT
GTGAGGGTTTCAATGAGGTGCTGAAACAGTGCCGACTTGCAAACGGATTGGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 100 .08 RPM |
| SRP007412_cerebellum | 30 .61 RPM |
| SRP007412_heart | 43 .69 RPM |
| SRP007412_kidney | 112 .16 RPM |
| SRP007412_liver | 46 .25 RPM |
| SRP007412_testis | 8 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016050 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000040295 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000010178 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000021267 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000012857 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000008598 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000106153 | ortholog_one2one | 8 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014938 | ortholog_one2one | 8 retrogenes | |
| Myotis lucifugus | ENSMLUG00000015151 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000070493 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000015819 | ortholog_one2one | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010097 | ortholog_one2many | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000017543 | ortholog_one2one | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000007743 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000010512 | ortholog_one2many | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012905 | ortholog_one2one | 15 retrogenes | |
| Tursiops truncatus | ENSTTRG00000015185 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000006104 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_129 | 94.59 | 98.01 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_809 | 84.77 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1331 | 79.49 | 77.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2065 | 77.48 | 98.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2259 | 92.44 | 78.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_2750 | 81.88 | 98.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_2838 | 93.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_3046 | 67.97 | 99.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_3167 | 73.83 | 97.35 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000019209 retrocopies