RetrogeneDB ID: | retro_cfam_1186 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 25:30325415..30325838(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1D | ||
Ensembl ID: | ENSCAFG00000016369 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.94 % |
Parental protein coverage: | 60.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKIT |
..K...AG..LPVFEH...G.DS..LTGLARGG.....LKRN...A....V..A.LQT.FVT.DEA.... | |
Retrocopy | SSKEDAAGDPLPVFEHHRQGSDSDKLTGLARGGDNASELKRNNVTA----VGVALLQTPFVTGDEAV--- |
Parental | NRRVNAIEHALVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEVMEPA |
N..VNA.EH..VIIPRI...LA.IITE...RER..FYRLKKIQ.KKKIL.EKSE.D..Q...AGE.MEP. | |
Retrocopy | NGSVNATEH--VIIPRIGCALACIITEFNVRERN-FYRLKKIQKKKKILQEKSEQDVAQQKVAGEGMEPT |
Parental | NLLAEEKDEDL |
NLLA.EK...L | |
Retrocopy | NLLAGEKRKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .13 RPM | 42 .75 RPM |
SRP017611_brain | 0 .16 RPM | 54 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 85 .06 RPM |
SRP017611_liver | 0 .00 RPM | 9 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008240 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016309 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000016369 | 2 retrocopies |
retro_cfam_1186 , retro_cfam_999,
|
Choloepus hoffmanni | ENSCHOG00000003733 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000009085 | 1 retrocopy | |
Felis catus | ENSFCAG00000011078 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006244 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000021418 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009896 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000007002 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015052 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000002288 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027710 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000005696 | 1 retrocopy | |
Drosophila melanogaster | FBgn0040377 | 1 retrocopy |