Parental gene:

ATP6V1D, ENSSSCG00000002288

Aliases:None
Description:ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D [Source:HGNC Symbol;Acc:13527]
Organism:Pig (Sus scrofa)
Coordinates:7:97373940..97394481(-)


>ENSSSCG00000002288
ATGTCGGGCAAAGACCGAATTGAAATCTTTCCCTCGCGAATGGCACAGACCATCATGAAGGCTCGGTTAAAAGGAGCACA
AACAGGTCGAAACCTCCTGAAGAAAAAATCTGATGCCTTAACTCTTCGATTTCGACAGATCCTTAAGAAGATAATAGAGA
CTAAAATGTTGATGGGTGAAGTGATGAGAGAAGCTGCTTTTTCACTTGCCGAGGCCAAGTTCACAGCAGGGGACTTCAGC
ACCACAGTTATCCAAAACGTAAATAAAGCCCAAGTGAAGATTAGAGCAAAGAAAGATAATGTAGCAGGTGTTACTTTGCC
AGTATTTGAACATTATCATGAAGGAACCGACAGTTATGAGCTGACTGGTTTAGCCAGAGGTGGGGAACAGTTGGCTAAAC
TGAAGAGGAATTATGCCAAAGCAGTGGAACTGCTGGTGGAACTAGCTTCGCTGCAGACTTCCTTTGTTACTTTGGATGAA
GCTATTAAGATAACCAACAGGCGTGTAAATGCCATTGAACACGTCATCATTCCTCGGATTGAACGCACCCTTGCTTATAT
CATCACAGAGCTGGATGAGAGAGAGCGAGAAGAGTTCTATAGGTTAAAGAAAATACAAGAGAAGAAAAAGATTCTCAAGG
AAAAGTCTGAGAAAGACTTGGAACAACGAAGGGCAGCTGGAGAGGCGATGGAGCCTGCTAATCTTCTGGCTGAGGAGAAG
GATGAGGATCTTCTGTTTGAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 16 .19 RPM
SRP014902_testis 28 .01 RPM
SRP018288_heart 21 .74 RPM
SRP018288_kidney 129 .63 RPM
SRP018288_liver 21 .91 RPM
SRP018288_lung 30 .45 RPM
SRP018856_adipose 20 .18 RPM
SRP035408_brain 87 .98 RPM
SRP035408_liver 30 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008240 ortholog_one2one 1 retrogene
retro_amel_332,
Bos taurus ENSBTAG00000016309 ortholog_one2one 2 retrogenes
retro_btau_1757, retro_btau_408,
Canis familiaris ENSCAFG00000016369 ortholog_one2one 2 retrogenes
retro_cfam_1186, retro_cfam_999,
Choloepus hoffmanni ENSCHOG00000003733 ortholog_one2many 5 retrogenes
retro_chof_1229, retro_chof_2711, retro_chof_54, retro_chof_926, retro_chof_938,
Cavia porcellus ENSCPOG00000009085 ortholog_one2many 1 retrogene
retro_cpor_36,
Felis catus ENSFCAG00000011078 ortholog_one2one 1 retrogene
retro_fcat_632,
Myotis lucifugus ENSMLUG00000006244 ortholog_one2many 5 retrogenes
retro_mluc_2345, retro_mluc_442, retro_mluc_540, retro_mluc_666, retro_mluc_94,
Macaca mulatta ENSMMUG00000021418 ortholog_one2one 1 retrogene
retro_mmul_1159,
Monodelphis domestica ENSMODG00000009896 ortholog_one2many 5 retrogenes
retro_mdom_1196, retro_mdom_1522, retro_mdom_1730, retro_mdom_390, retro_mdom_594,
Mustela putorius furo ENSMPUG00000007002 ortholog_one2one 2 retrogenes
retro_mputfur_1381, retro_mputfur_748,
Otolemur garnettii ENSOGAG00000015052 ortholog_one2one 1 retrogene
retro_ogar_966,
Ictidomys tridecemlineatus ENSSTOG00000027710 ortholog_one2one 1 retrogene
retro_itri_383,
Vicugna pacos ENSVPAG00000005696 ortholog_one2one 1 retrogene
retro_vpac_232,
Drosophila melanogaster FBgn0040377 ortholog_one2many 1 retrogene
retro_dmel_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_357 72.41 91.50
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Download FASTA sequences of all ENSSSCG00000002288 retrocopies