RetrogeneDB ID: | retro_cfam_1575 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 35:25665943..25666374(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSTC | ||
Ensembl ID: | ENSCAFG00000011286 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris oligosaccharyltransferase complex subunit (OSTC), mRNA. [Source:RefSeq mRNA;Acc:NM_001160121] |
Percent Identity: | 72.97 % |
Parental protein coverage: | 97.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | METLYRVPFLVLECPNLKLKKPPWVHMPSAMTVYA-LVVVSYFLITGGIIYDVI-VEPPSVGSMTDEHGH |
METLYRVP.LVLECPNLKLKKPPWV....AMTV...LVV.SYFLIT...I.....VEPP.VGS..DEHG. | |
Retrocopy | METLYRVPLLVLECPNLKLKKPPWVRVLWAMTVCS>LVV-SYFLITSLTIDVLL<VEPPGVGSLPDEHGP |
Parental | QRPVAFLAYRVNGQYIMEGLASSFLFTMGGLGFIILDRS-NAPNIPKLNRFLLLFIGFVCVLLSFFMARV |
Q.PV.FLAY.VNGQ.I.EGL.S.FLFTMGGLG..ILD....APNIPKLNRFLL.F.GF.CVLLSF.MARV | |
Retrocopy | QKPVTFLAYKVNGQ*ILEGLTSIFLFTMGGLGLMILDHG<SAPNIPKLNRFLLIFTGFFCVLLSFVMARV |
Parental | FMRMKLPG |
F.RM.LPG | |
Retrocopy | FRRMDLPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 7 .06 RPM |
SRP017611_brain | 0 .00 RPM | 3 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .68 RPM |
SRP017611_liver | 0 .00 RPM | 2 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001753 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011286 | 12 retrocopies | |
Callithrix jacchus | ENSCJAG00000016002 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000024467 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003717 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000026873 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000020599 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008869 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041084 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011056 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005915 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023322 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009145 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021644 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000000724 | 2 retrocopies |